LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo8g01492	ATGGGTCGGAAACACGACGCCGTTTTGGTCAGCGAACCAGTCGCCGAAGAAGCCCCCTACAGCCCCGACCTCGATTCCGAGAAGAAGAAGAAGAAAAAGAAGAACAAAAACAAAGACAAGCACCAAACCGAAAGCAGCCCCAAGCGAAAGCTCGACGAACTCGACCTCCAAAACGGCACCGAATCGAAGAAGAAGAAAAAGAAGAAGCACCACGAGTCCAAAGAGAACGCCGAGGAAACCAACGGCGACAACAACAACGGTGCTATTCGTGACGAAACGGTGACGGACGGGTCCGTGGTGGTCACTGGTAAGAATGCTGGAGACGCGAAATACGCGGCGGTGAAGAGCTTCGCGGATTCGGGGCTGCCGGAGAACGTGCTGGAGTGCTGCAAGGGTTTCGAGAAGCCTTCTCCGATTCAGTCCCGAGCGTGGCCTTTCTTATTGGATGGTCGTGATTTGATTGGAATTGCTGCCACTGGATCAGGGAAGACGTTAGCATTCGGCTTACCGGCGGTTATGCATGTGTTGGGAAAGCGGAAGGGGAAAAGTTCCAAGGGTCGGAACCCTCTTTGCCTTGTGCTCTCTCCCACTAGAGAGCTAGCTCAACAAATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGCGTGGAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCCTCACTAAAATCTGGCATTGATATTGTCATTGGAACCCCTGGTCGTATCCAGGATCTGATTGAAATGGGTGTCTGTTGCCTTAAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAGACATGTTCTGATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATCACTTGGCACAGGAGTTTATGGATCCTAATCCTGTAAAAGTTGTTGTAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGTTCTCGTGATAAGCGCCTAGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGCAATCGAGTACTGGTTTTTGTTTTGTACAAATGGGAAACTAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGTTGTATCAATACATGGGGACAAAGCCCAACATGATCGCACAAAGGCACTCTCATTGTTCAAGAAGGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCCGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCTCTGACTACAGAAGATTACGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCATGCAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTACCAGATGCCCTCCTGAAATTTGGTACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCACACTTCAAGGAAATCCCTGTGGATGCTCCAAAGTCTCAAAAGAAAACATTTGACGACTCTGACGAAGACTAA	1602	0.4732	MGRKHDAVLVSEPVAEEAPYSPDLDSEKKKKKKKNKNKDKHQTESSPKRKLDELDLQNGTESKKKKKKKHHESKENAEETNGDNNNGAIRDETVTDGSVVVTGKNAGDAKYAAVKSFADSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAVMHVLGKRKGKSSKGRNPLCLVLSPTRELAQQISDVMCDAGRSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSDRQMVMFSATWPLPVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLVALLEKYHKSQSNRVLVFVLYKWETKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFDDSDED	533

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo8g01492	533	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	60	493	-	-
	Pumo8g01492	533	FunFam	ATP-dependent RNA helicase RhlB	324	501	-	-
	Pumo8g01492	533	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	346	497	IPR001650	-
	Pumo8g01492	533	SMART	ultradead3	132	338	IPR014001	-
	Pumo8g01492	533	MobiDBLite	consensus disorder prediction	1	91	-	-
	Pumo8g01492	533	Gene3D	-	325	500	IPR027417	-
	Pumo8g01492	533	Pfam	Helicase conserved C-terminal domain	349	458	IPR001650	-
	Pumo8g01492	533	Coils	Coil	24	44	-	-
	Pumo8g01492	533	Gene3D	-	57	324	IPR027417	-
	Pumo8g01492	533	Pfam	DEAD/DEAH box helicase	138	305	IPR011545	GO:0003676\|GO:0005524
	Pumo8g01492	533	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	471	IPR027417	-
	Pumo8g01492	533	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	115	141	IPR014014	GO:0003724
	Pumo8g01492	533	CDD	DEADc	131	322	-	-
	Pumo8g01492	533	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	144	321	IPR014001	-
	Pumo8g01492	533	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	267	275	IPR000629	-
	Pumo8g01492	533	MobiDBLite	consensus disorder prediction	39	62	-	-
	Pumo8g01492	533	SMART	helicmild6	377	458	IPR001650	-
	Pumo8g01492	533	CDD	SF2_C_DEAD	335	467	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo8g01492	Pumo-Chr8	49512624	49516855	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo8g01492	114	466	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.085	3.58e-58	197

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo8g01492	K14811		-	gmx:100806057	971.844