Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01425 ATGTGGGGTGTCCAGCAATTTATGCCTCCCTATGGTACTCCGCCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTTTACCATGCCTTCTCCAAATGGCATTGCTGAGGCTTCAGGAAACACTCCTGGCAGCATGGAAGCTGATGGTAAGCCTCCTGAAGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCAAAGAGTGGTGAGAGCGCAAGTGAAGGTGAAGGTACTAGTGAAGGAAGTGATGCAAACTCTCAAAATGACTCTCAATTGAAATCAGGGGGCAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCAGTTCGGCATATACTCCTCAAAATGGGGGACTAAATACACCTCATACAGTTGTCAATCAAACTATGTCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTCCCACGACAAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCATCCAACATTCCTGGACTTGGCAGAAAGGTTCCATCTACTGCAGTTGCTGGAGGGATGGTTACTGTTGGATCACGGGATAGTGCTCAGTCACAACTCTGGCTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGAAAGCAGTCTAACAGGGAATCTGCTCGCAGATCCAGGTTGCGCAAGCAGGCCGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTCCGGTCAGAAGTAAATCGAATCAGGAGTGAGTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGGAGAGACTTGGGGAACTACCTGCGAACGATGATCATCGAAGGTCTGGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGTCAGACAGAGGCTGTGCAGGGTGGTCATTAG 1053 0.4672 MWGVQQFMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFTMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTPGTSANGIHSKSGESASEGEGTSEGSDANSQNDSQLKSGGRQDSFEDEPSQNGSSAYTPQNGGLNTPHTVVNQTMSIIPISAGGAPGAVPGPTTNLNIGMDYWGTPASSNIPGLGRKVPSTAVAGGMVTVGSRDSAQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVNRIRSEYEQLLSENAALKERLGELPANDDHRRSGRNDQHVGNDTQQSGQTEAVQGGH 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01425 350 Gene3D - 248 302 - -
Pumo8g01425 350 SMART brlzneu 245 309 IPR004827 GO:0003700|GO:0006355
Pumo8g01425 350 MobiDBLite consensus disorder prediction 315 331 - -
Pumo8g01425 350 Pfam bZIP transcription factor 245 307 IPR004827 GO:0003700|GO:0006355
Pumo8g01425 350 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 247 310 IPR004827 GO:0003700|GO:0006355
Pumo8g01425 350 Pfam Disordered region downstream of MFMR 73 212 - -
Pumo8g01425 350 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 340 IPR044827 GO:0003700|GO:0006355|GO:0043565
Pumo8g01425 350 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 252 267 IPR004827 GO:0003700|GO:0006355
Pumo8g01425 350 MobiDBLite consensus disorder prediction 84 168 - -
Pumo8g01425 350 MobiDBLite consensus disorder prediction 247 270 - -
Pumo8g01425 350 MobiDBLite consensus disorder prediction 48 168 - -
Pumo8g01425 350 SUPERFAMILY Leucine zipper domain 248 304 IPR046347 GO:0003700|GO:0006355
Pumo8g01425 350 Coils Coil 265 313 - -
Pumo8g01425 350 MobiDBLite consensus disorder prediction 332 350 - -
Pumo8g01425 350 Pfam G-box binding protein MFMR 1 34 IPR012900 -
Pumo8g01425 350 CDD bZIP_plant_GBF1 250 300 IPR045314 GO:0003700|GO:0006355
Pumo8g01425 350 MobiDBLite consensus disorder prediction 311 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01425 Pumo-Chr8 46943865 46950613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01425 1 344 bZIP Transcription Factor Family AT2G35530 63.663 1.60e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo8g01425 MFMR_assoc 8.5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01425 K09060 - gmx:778122 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01425 8 46943865 46950613 Pumo8g01425 8 46943865 46950613 ECH