Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01413 ATGTATGGGGATTGCCAAGTTATGTCAAATATGGGAGGGAACGTAGTAGTAAACTCAGACACCCTCTTCTCTTCCTCGATCCAGAACTCCAACTTCAACTTCATCCCCACCATGCCTTTTCAACCTTTTCCTTCCATGAAAGAAGAAGATGGGATCCTGCGAGGGAAGGAAGAGATGGAGAGTGGATCAGGGAGTGAACAAGTTGAAGACAAGTCAGGGAATGAACAAGAGAGTGAACAACCCACAAAGAAGAAACGTTATCACAGGCACACTGCACGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGCCCTCACCCGGATGATAAGCAGAGGCTGAAACTGAGCCATGAATTGGGCCTGAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAGCAAGACCGATCAGATAATGTCATACTTAGAGCCGAGAATGAGACTCTTAAGAGTGAAAACTTTCGGTTACAAGCAGCGCTGCGAAATGTGATCTGTCCCAATTGTGGTGGCCCATGCATAATGGGTGCTGATATGGGCTTGGATGAGCACCAACTTCGCATTGAAAATGCTCGGTTAAGAGAAGAGTTAGAACGCGTGTGTTGTCTCACCACAAGATACACTGGGCGTCCGATACAAACAATGGCAGCAGGTCCTGCTCTTATGGCTCCTTCATTGGATTTGGACATGAACATATACCCAAGGCACTTTGCGGATCCTATTGCTCCTTGCACAGAAATGATTCCTGTGCCAATGTTGCCACCCGAAGCTTCACCGTTTTCTGAGGGTGGTGGTGTCCTAATGGAAGAAGAGAAGTCTCTGGCATTGGACCTTGCGGCTTCTTCCATGGCTGAACTTGTGAAGATGTGTCAGACAAACGAGCCACTTTGGATCCGAAGCAGTGAGGGTGAAAGGGAATTGCTCAATTTTGAAGAGCACGCAAGGATGTTTGCTTGGCCTCAGAATCTGAAGCACCTAACTGAGCTAAGGACTGAAGCTAGCCGTGACACTGCTGTGGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCTCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCTAGAGCAAAAACAGTCCAAATCATATCTTCTGGTGCTTCCGGTCATGCAAGCGGGACTCTTCAGCTGATGTACGCAGAATTCCAAGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCCGTTGATAGCTTTCACCAAAATTTTCACCCTTCTTATCCAAGATACTGCAGGAGGTCCTCTGGCTGCGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAACCTGTGCATCAGATATTCTGCAACTATGTGTACAGTGGAATGGCATTCGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAATGTGAGAGGGTCGCGAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCACCAGAAGCGCGAAAGAACTTGATGAAACTTGCTCAAAGAATGATAAAAACTTTTAGCCTTAACATGAGTACCTCCGGTGGTCAATCATGGACAGCCATATCAGATTCCCCTGAAGACACTGTTAGAATCACAACTAGGAAAACCACAGAGCCTGGCCAACCTAATGGCGTGATTCTAAGTGCAGTTTCAACCACTTGGTTGCCCTATTCTCATACCAAGGTCTTTGATCTCCTCAGGGATGAACGCCACAGATCTCAGATGATGGTCATGCCCAACAATCGAGCTCTCCTGCGGATACGATTATTCCAGAGGTTGTGA 1896 0.4652 MYGDCQVMSNMGGNVVVNSDTLFSSSIQNSNFNFIPTMPFQPFPSMKEEDGILRGKEEMESGSGSEQVEDKSGNEQESEQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENETLKSENFRLQAALRNVICPNCGGPCIMGADMGLDEHQLRIENARLREELERVCCLTTRYTGRPIQTMAAGPALMAPSLDLDMNIYPRHFADPIAPCTEMIPVPMLPPEASPFSEGGGVLMEEEKSLALDLAASSMAELVKMCQTNEPLWIRSSEGERELLNFEEHARMFAWPQNLKHLTELRTEASRDTAVVIMNSVTLVDAFLDAQKWMELFPTIVSRAKTVQIISSGASGHASGTLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFCNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFSLNMSTSGGQSWTAISDSPEDTVRITTRKTTEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMMVMPNNRALLRIRLFQRL 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01413 631 FunFam Homeobox-leucine zipper protein HDG1 71 157 - -
Pumo8g01413 631 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Pumo8g01413 631 CDD homeodomain 84 142 IPR001356 GO:0003677
Pumo8g01413 631 MobiDBLite consensus disorder prediction 56 84 - -
Pumo8g01413 631 SUPERFAMILY Bet v1-like 276 511 - -
Pumo8g01413 631 SUPERFAMILY Bet v1-like 527 615 - -
Pumo8g01413 631 Pfam Homeodomain 84 139 IPR001356 GO:0003677
Pumo8g01413 631 CDD START_ArGLABRA2_like 279 508 - -
Pumo8g01413 631 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 80 621 IPR042160 -
Pumo8g01413 631 MobiDBLite consensus disorder prediction 56 91 - -
Pumo8g01413 631 SUPERFAMILY Homeodomain-like 75 142 IPR009057 -
Pumo8g01413 631 Pfam START domain 285 509 IPR002913 GO:0008289
Pumo8g01413 631 Gene3D - 69 153 - -
Pumo8g01413 631 ProSiteProfiles START domain profile. 275 512 IPR002913 GO:0008289
Pumo8g01413 631 Gene3D - 329 493 IPR023393 -
Pumo8g01413 631 SMART HOX_1 82 145 IPR001356 GO:0003677
Pumo8g01413 631 SMART START_1 284 509 IPR002913 GO:0008289
Pumo8g01413 631 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01413 Pumo-Chr8 46798983 46808556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01413 8 621 Homeobox Transcription Factor Family AT5G46880 55.081 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo8g01413 START 5.4e-40 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01413 - - gmx:100812829 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01413 8 46798983 46808556 Pumo8g01413 8 46798983 46808556 ECH
Pumo8g01413 8 46798983 46808556 Pumo3g00911 3 14144392 14150589 ECH