Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01412 ATGTATGGGGATTGCCAAGTTATGTCAAATATGGGAGGGAACGTAGTAGTAAACTCAGACACCCTCTTCTCTTCCTCGATCCAGAACTCCAACTTCAACTTCATCCCCACCATGCCTTTTCAACCTTTTCCTTCCATGAAAGAAGAAGATGGGATCCTGCGAGGGAAGGAAGAGATGGAGAGTGGATCAGGGAGTGAACAAGTTGAAGACAAGTCAGGGAATGAACAAGAGAGTGAACAACCCACAAAGAAGAAACGTTATCACAGGCACACTGCACGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGCCCTCACCCGGATGATAAGCAGAGGCTGAAACTGAGCCATGAATTGGGCCTGAAACCGCGCCAGGTTAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAGCAAGACCGATCAGATAATGTCATACTTAGAGCCGAGAATGAGACTCTTAAGAGTGAAAACTTTCGGTTACAAGCAGCGCTGCGAAATGTGATCTGTCCCAATTGTGGTGGCCCATGCATAATGGGTGCTGATATGGGCTTGGATGAGCACCAACTTCGCATTGAAAATGCTCGGTTAAGAGAAGAGTTAGAACGCGTGTGTTGTCTCACCACAAGATACACTGGGCGTCCGATACAAACAATGGCAGCAGGTCCTGCTCTTATGGCTCCTTCATTGGATTTGGACATGAACATATACCCAAGGCACTTTGCCGATCCTATTGCTCCTTGCACAGAAATGATTCCTGTGCCAATGTTGCCACCCGAAGCTTCACCGTTTTCTGAGGGTGGTGGTGTCCTAATGGAAGAAGAGAAGTCTCTGGCATTGGACCTTGCGGCTTCTTCCATGGCTGAACTTGTGAAGATGTGTCAGACAAACGAGCCACTTTGGATCCGAAGCAGTGAGGGTGAAAGGGAAGTGCTCAATTTTGAAGAGCACGCAAGGATGTTTGCTTGGCCTCAGAATCTGAAGCACCTAACTGAGCTAAGGACTGAAGCTAGCCGTGACACTGCTGTGGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCTCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCTAGAGCAAAAACAGTCCAAATCATATCTTCTGGTGCTTCCGGTCATGCAAGCGGGACTCTTCAGCTGATGTACGCAGAATTCCAAGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCCGTTGATAGCTTTCACCAAAATTTTCACCCTTCTTATCCAAGATACTGCAGGAGGTCCTCTGGCTGCGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAACCTGTGCATCAGATATTCTGCAACTATGTGTACAGTGGAATGGCATTCGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAATGTGAGAGAGTCGCGAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCACCAGAAGCGCGAAAGAACTTGATGAAACTTGCTCAAAGAATGATAAAAACTTTTAGCCTTAACATGAGTACCTCCGGTGGTCAATCATGGACAGCCATATCAGATTCCCCTGAAGACACTGTTAGAATCACAACTAGGAAAATCATAGAGCCTGGCCAACCTAATGGCGTGATTCTAAGTGCAGTTTCAACCACTTGGTTGCCCTATTCTCATACCAAGGTCTTTGATCTCCTCAGGGATGAACGCCACAGATCTCAGATGGATGCTCTTTCCAACGGGAACTTGTTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCCCTTCTTCGCATAAATGTAGCGAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACCGACCAATCTGGAAGCCTAGTAGTGTACACCACCATCGACGTGGAATCCATCCAGCTAGCCATGAGTGGCGAGGACCCTTCTTGCATTGCCCTTCTTCCCCAAGGCTTCAAGATAGTGCCAATGCTATCATCACCCATCATCGATGCCAACAACTCGTCCGAGCCAGCTCCATCTCTCAACTCATCAGGTTGCCTCCTAACCATGGGGCTGCAGGTTCTCGCGAGCACAATCCCCTCTGCAAAGCTCAACCTCTCGAGCGTGACTGCCATCAACAACCACCTCTGCAACACCTTGCACCAGATTGAAGCTGCTCTTTCTAGCTCCCATGAGAATGGCACTTTCCTTTGCGCTGCTGAACCCACCACTAGTAGTGCACCTCCCAAGCAGTGA 2376 0.4747 MYGDCQVMSNMGGNVVVNSDTLFSSSIQNSNFNFIPTMPFQPFPSMKEEDGILRGKEEMESGSGSEQVEDKSGNEQESEQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENETLKSENFRLQAALRNVICPNCGGPCIMGADMGLDEHQLRIENARLREELERVCCLTTRYTGRPIQTMAAGPALMAPSLDLDMNIYPRHFADPIAPCTEMIPVPMLPPEASPFSEGGGVLMEEEKSLALDLAASSMAELVKMCQTNEPLWIRSSEGEREVLNFEEHARMFAWPQNLKHLTELRTEASRDTAVVIMNSVTLVDAFLDAQKWMELFPTIVSRAKTVQIISSGASGHASGTLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFCNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFSLNMSTSGGQSWTAISDSPEDTVRITTRKIIEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNLLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVESIQLAMSGEDPSCIALLPQGFKIVPMLSSPIIDANNSSEPAPSLNSSGCLLTMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALSSSHENGTFLCAAEPTTSSAPPKQ 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01412 791 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Pumo8g01412 791 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 80 767 IPR042160 -
Pumo8g01412 791 CDD homeodomain 84 142 IPR001356 GO:0003677
Pumo8g01412 791 SMART START_1 284 509 IPR002913 GO:0008289
Pumo8g01412 791 MobiDBLite consensus disorder prediction 56 84 - -
Pumo8g01412 791 SUPERFAMILY Homeodomain-like 75 142 IPR009057 -
Pumo8g01412 791 CDD START_ArGLABRA2_like 279 508 - -
Pumo8g01412 791 FunFam Homeobox-leucine zipper protein HDG1 71 157 - -
Pumo8g01412 791 MobiDBLite consensus disorder prediction 56 91 - -
Pumo8g01412 791 Gene3D - 322 493 IPR023393 -
Pumo8g01412 791 Pfam Homeodomain 84 139 IPR001356 GO:0003677
Pumo8g01412 791 ProSiteProfiles START domain profile. 275 512 IPR002913 GO:0008289
Pumo8g01412 791 Gene3D - 69 152 - -
Pumo8g01412 791 Pfam START domain 285 509 IPR002913 GO:0008289
Pumo8g01412 791 SUPERFAMILY Bet v1-like 276 511 - -
Pumo8g01412 791 SMART HOX_1 82 145 IPR001356 GO:0003677
Pumo8g01412 791 SUPERFAMILY Bet v1-like 536 764 - -
Pumo8g01412 791 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01412 Pumo-Chr8 46785354 46791648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01412 8 770 Homeobox Transcription Factor Family AT5G46880 57.367 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo8g01412 START 4e-40 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01412 - - gmx:100793658 1439.86