Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01409 ATGGAGCTATTCCCAGCACAACCAGACTTGTCCTTACAAATCAGCCCTCCAAACACCAAACCCGCCACATCAAGTTGGAGGAGAAGCACGGAAGAAGACATGGATTTGGGGTTTTGGAAGAGAGCCTTGGACTCAAGAAACTCCCTATCATCAATGGCCAAACAACAAGACTCTTGCTTCGACCTCTCCCTCTCCAATCCAAATAAAGCCTCAGATAATAACCACCACTCCAACACCACCTCCAACCTCATTCACCACTTCCAAAACGGTGCCACTAATGCCACCACCACCACCAACCCCTTCCAAACCTTTCAGCAAAACCACTACTTCCACCAGCCACTCTTCCAGCCTCAGCACCACCAAAGCCTAAGCCAAGACCTTGGCTTTCTAAGACCCATTAGAGGAATCCCAGTGTACCAAAACCCTCCCTCTATACCATTCACCCAACACCACCACCACCATCATCATCTCCCTCTAGAAGCTTCCACCACCACCCCTTCTTCTATTATTTCCAACACAACCACTGGCTCCACCCCTTTCCACTCTCAGGCCCTTATGAGATCAAGGTTCTTGTCACGCTTCCCTGCCAAGCGTAGCATGAGGGCTCCAAGGATGCGTTGGACTTCTACCCTCCACGCTCGCTTTGTTCATGCCGTTGAACTCTTAGGTGGCCACGAAAGGGCTACACCCAAATCAGTGCTTGAGCTAATGGATGTCAAGGATCTCACTTTAGCTCATGTTAAATCTCATTTACAGATGTACCGGACGGTGAAAACTACAGATAGGGCGGCCGCTTCATCAGGGCAATCGGATGTGTATGATAATGGGTCGTCTGGAGATACTTCTGATGACTTAATGTTTGACATAAAATCTTCAAGAAGGTCTGATCTATCCATTAAGCAGGGAAGATCAAGTGTTAATCAAGATAAGGAATATGATCATGGTCTTTGGGGCAACTCTTCCAGGGAAGCTTGGTTGCATGGGAAGACAAAGGCTGATTCTGTTGGAACCGTGCCTTCTCTTGAGAAGGAAATGGATCCAAAGTGCCTAAGCTATGAGAGAATATCAGATGGAAGTTCATCCTCAAACGTCTCAGGATCAAGCCCGAAGAAGCCTAATTTGGATTTGGAATTCAGCTTGGGCCAGCCACTTTAA 1155 0.4771 MELFPAQPDLSLQISPPNTKPATSSWRRSTEEDMDLGFWKRALDSRNSLSSMAKQQDSCFDLSLSNPNKASDNNHHSNTTSNLIHHFQNGATNATTTTNPFQTFQQNHYFHQPLFQPQHHQSLSQDLGFLRPIRGIPVYQNPPSIPFTQHHHHHHHLPLEASTTTPSSIISNTTTGSTPFHSQALMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDIKSSRRSDLSIKQGRSSVNQDKEYDHGLWGNSSREAWLHGKTKADSVGTVPSLEKEMDPKCLSYERISDGSSSSNVSGSSPKKPNLDLEFSLGQPL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01409 384 MobiDBLite consensus disorder prediction 330 384 - -
Pumo8g01409 384 MobiDBLite consensus disorder prediction 261 285 - -
Pumo8g01409 384 MobiDBLite consensus disorder prediction 11 25 - -
Pumo8g01409 384 Gene3D - 202 259 - -
Pumo8g01409 384 MobiDBLite consensus disorder prediction 354 372 - -
Pumo8g01409 384 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 383 IPR044847 GO:0000976|GO:0006355|GO:0010158
Pumo8g01409 384 MobiDBLite consensus disorder prediction 261 286 - -
Pumo8g01409 384 MobiDBLite consensus disorder prediction 1 30 - -
Pumo8g01409 384 FunFam Myb family transcription factor 201 259 - -
Pumo8g01409 384 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Pumo8g01409 384 SUPERFAMILY Homeodomain-like 200 256 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01409 Pumo-Chr8 46721762 46726933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01409 1 383 G2-like Transcription Factor Family AT4G17695 38.272 4.29e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo8g01409 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01409 - - gmx:100798081 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01409 8 46721762 46726933 Pumo8g01409 8 46721762 46726933 ECH