Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01394 ATGAGCTTTCAGGACATCGAGGCCGGCCGGCCCTTCGCTTCCCGGCGAAATCTAATCAACGGCAAACAAGACCCCACGCAGGCGGTGGCTTCCGGCATATTTCAGATCAACACCGCCGTCTCCACTTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAGGATACCCCCGAACTCCGCGATAAGCTGCATAAGACGAGACTTCACATTGGACAATTGGTGAAGGATACTTCCGCTAAACTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATGCAAATAAGAAGATAGCGGATGCTAAGCTCGCGAAAGATTTTCAGGCAGTGTTGAAAGAATATCAGAAGGCACAGCGTCTTTCAGCTGAGAGGGAAACAGCTTATAGTCCTTTTGTTCCACAAGCAGCTCTTCCATCCAGCTATACAGCCAGTGAAGTAGACGTTAGCTCTGATAAGACTCCAGAACAGCGTGCCCTTCTTGTGGAGTCCAGAAGACAGGAAGTATTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGCAGCAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCCGTGCTTGTCCATGAGCAAGGAACAATGATTGATGATATTGGATCCTAA 672 0.4658 MSFQDIEAGRPFASRRNLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKDTSAKLKQASEIDHNVEVNANKKIADAKLAKDFQAVLKEYQKAQRLSAERETAYSPFVPQAALPSSYTASEVDVSSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01394 223 CDD SynN 23 148 IPR006011 GO:0016020
Pumo8g01394 223 Gene3D - 20 133 - -
Pumo8g01394 223 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 223 IPR000727 -
Pumo8g01394 223 PANTHER SYNTAXIN 26 222 IPR045242 -
Pumo8g01394 223 SMART SynN_4 13 127 IPR006011 GO:0016020
Pumo8g01394 223 SUPERFAMILY t-snare proteins 22 221 IPR010989 GO:0016020|GO:0016192
Pumo8g01394 223 Gene3D - 181 223 - -
Pumo8g01394 223 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Pumo8g01394 223 FunFam Syntaxin-22 like 20 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01394 Pumo-Chr8 46505393 46508353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01394 1 223 SNARE and Associated Proteins AT5G46860 78.475 1.07e-125 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01394 - - gmx:100796477 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01394 8 46505393 46508353 Pumo8g01394 8 46505393 46508353 ECH