Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01391 ATGGACGGCGGCGGGTCCACCCCGGCGGCGCCGATTCCGAACGCGAACGGGCCGCCGCCGTTTCTGAGCAAGACCTACGACATGGTGGAGGACCCTTCCACCGACGCGATCGTGTCGTGGAGCGCAACGAACAACAGCTTCATCGTGTGGGACCCACCCGAATTCGCCAGAGACCTTTTGCCCAAATACTTCAAGCACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTATGGTTTCAGGAAGGTCGATCCAGATCGCTGGGAATTTGCAAATGAGGGTTTTTTGAAGGGTCAAAAGCACTTGCTTAGGAGTATAACACGACGAAAACCTGCCCATGGTCATAATCATCAACAGCCTCAGCAACCACATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGATTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGGTTGAGGCAGCAGCAACAGACCACTGATAACCAGCTGCAAACAATGGTTCAGCGCCTTCAGGGAATGGAACAACGACAGCAGCAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAGCAAAATGAGAGCAATAGGCGCATAACTGAAGTCAACAAAAAGCGCCGGCTTAAACAGGAAGGTATTGCTGAAACAGATCATGCTGCTGCTCCAGATGGACAAATTATTAAATATCAACCTATGATGAATGAAGCAGCAAAAGCAATGCTTAGGCAGATCATGAAATGGGATACTTCTCGTGTAGAATCTTTTAATAAAAACTCTGATAACTACATGATTGGTGATGCTTCATCATCTTCCAGTGGTGCAATGGACAGTAGCAGCTCTTCAGGCTGGACTTCTGGAGTAACTCTTAAAGAGGTCTCTCCAGCTTCGGTGCAGTCTTCACACATTCCAGCTGCAACTGGGACTCAAGGGTATGTCCCCTTAACTGTTAAACCTGAAGTTTTATCTGTACCACAAGCAGTGGCTTCTGAAAAAGGTACGAAGGATGCAGCACATGGTGCACCTTCTATCCCTGTTTCTCAAGCAGATGTGATGATCCCTGATCTTCCTCCAATAACAGAGATGGTGACAGGAAATATTCTTGATATGCCTGAAGAAAATTATATGGCAACTGAGACAGATGAGGGATATATGGATCCTTCTTCATTTCCCGTTGATTTTGAAGGTATTTCACCCGATGCAGACATTGATGATTTGTTAGGCAATCCTTCTATTTGGGATGAAATTTTGCAAACTCCAGTTCCAGAGGAAATCGAGACCAATGTGGCCGAAGTATCCAAAAGGAATGAGGTCCAGCCAACGGAAAATGGATGGACCAAAACTCAACATATGGATCACCTTGCAGAGCAGATGGGTCTTCTTTCTTCTGATGCAAAAAGAGTTTGA 1464 0.4611 MDGGGSTPAAPIPNANGPPPFLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLKGQKHLLRSITRRKPAHGHNHQQPQQPHGQSSSVGACVEVGKFGLEEEIERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEVNKKRRLKQEGIAETDHAAAPDGQIIKYQPMMNEAAKAMLRQIMKWDTSRVESFNKNSDNYMIGDASSSSSGAMDSSSSSGWTSGVTLKEVSPASVQSSHIPAATGTQGYVPLTVKPEVLSVPQAVASEKGTKDAAHGAPSIPVSQADVMIPDLPPITEMVTGNILDMPEENYMATETDEGYMDPSSFPVDFEGISPDADIDDLLGNPSIWDEILQTPVPEEIETNVAEVSKRNEVQPTENGWTKTQHMDHLAEQMGLLSSDAKRV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01391 487 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g01391 487 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g01391 487 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g01391 487 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g01391 487 MobiDBLite consensus disorder prediction 1 20 - -
Pumo8g01391 487 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 296 IPR027725 -
Pumo8g01391 487 FunFam Heat shock transcription factor 1 14 111 - -
Pumo8g01391 487 MobiDBLite consensus disorder prediction 111 130 - -
Pumo8g01391 487 Gene3D - 14 111 IPR036388 -
Pumo8g01391 487 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g01391 487 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
Pumo8g01391 487 Coils Coil 139 166 - -
Pumo8g01391 487 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01391 Pumo-Chr8 46490186 46494057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01391 2 481 HSF AT1G32330 54.076 4.04e-170 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo8g01391 HSF_DNA-bind 3.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01391 K09419 - gmx:100815121 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01391 8 46490186 46494057 Pumo8g01391 8 46490186 46494057 ECH