Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01389 ATGAGAGGGAAACAGCAGCGTGCAGCGGAAAATTCCTCCTTCACTCCAAACCCTTCTTCTCCTCACCACAACCACAATTTGGGCCCGCCAAACCACCGCAGGCCCGCACGTAGGAACCGAGGCCCACAGCAGCACCAACACCCGAACTTGAAATACCGCGTCGTCAACAAGCCCGAACCGGCTCCTTCTTCCAACAACTCTCACTCCGTGGAGGATGTAAACGTTGACGTCACTGCCACGCCCCAAAATCGCGATAACGAGGACGGTGTTGGTGCCTCCGAGCTCAACACCGTTGACGACGCCGATCGCGTGGCTAGTTCAAGCAAGGCCGAGGAAGGAGACGATGCCGACGATGACGATGATGATGATGATGATATTCAAGCTAGGCTTGAGAAGTTGCTCAGTAAAATCGAGGAACCTGAATTGTCCGAGGAGCAGATCAGAATCAACGACCAATTGCAGCAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAACGTTTTCAGCCTTGAGAGGTGGAAAGGCCTGCGTTGTTTTCAGATACATATTCACGTTGATGTTTTAGGTGAAATTTCCATCACTGCTAACCTGAACTCTCTCGATCAACTTGAGACTGTAAGCAGCAATTCAGACGAGTTCCTATATACTTTCAAAGTCCAATATCTTCCACCAATTGTTTTGACGTGTTTATTACCTAAGTCGTACCCAAGCCACCAACCACCTATTTTTACACTGTCTGTTAAGTGGTTGGAACCCGTGAAGATTCTGAATCTTTGCTCCAAGTTGGATTCAATATGGGAAGAACAACAGGGGCAGGAAGTGATTTACCCTTGGGTAGAATGGTTACATGGTTCTTCTCTTTCTCATCTGAGATTTGATGAAGAAATCATGCTTGGGCCTTATGGCATGAATCATGTCCAGGATGAGCGTGTTATTTCAGGAGCTGAATGCATTGATGTTGATATTCCTTTTTTACGAAGTTACAACGATCAGAGACACAACGAGAAATTCCTCAAAGAATTGCATGATTGTAACATTTGCTTTAGTGAATATGCAGGCTCTGAGTTTATCTGGTTACCATGTAAGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGCACTGTTAGTAATCTTCAATGTCCCGAAGCAAAATGTGCAGTTATGATTCCACCTGGCCTTTTAAAACACTTGCTGGATGACACAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAAAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGGTGTGAAACACCCTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTATTTTAGCTTTTGTACCCTTTGCAGGGAACGACGCCATGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCGTCTCAATTAAAGGAAGATCAAAAGCGAAGGGAACGTGAAAAGATCAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTGTGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAAATGAAATGTGGTAATTGTGAACAATACTTCTGTTACCGCTGCAACAAAGCAATTGATGCATCAGATCCATATGGACATTTCAGGGATGGTTCATGTGAATTGTTCCCACGAGAAATGGTTGAGTCCTGGGAAGAGCGCATAAATCATCGCCAGGCGGTAGGACAATTACAGGCCGAGCTCTTTCCTCAACGTGGCTTGGCGTGTCCTAATTGTCGTCAATATAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTATGCAAAGAGATTGTCAGGCGTGGCACTAAGCATTATGGACCAAAGGGCTGCAAACAGCACTCCGAGGGATAG 1962 0.445 MRGKQQRAAENSSFTPNPSSPHHNHNLGPPNHRRPARRNRGPQQHQHPNLKYRVVNKPEPAPSSNNSHSVEDVNVDVTATPQNRDNEDGVGASELNTVDDADRVASSSKAEEGDDADDDDDDDDDIQARLEKLLSKIEEPELSEEQIRINDQLQQDEILVVESIYGENVFSLERWKGLRCFQIHIHVDVLGEISITANLNSLDQLETVSSNSDEFLYTFKVQYLPPIVLTCLLPKSYPSHQPPIFTLSVKWLEPVKILNLCSKLDSIWEEQQGQEVIYPWVEWLHGSSLSHLRFDEEIMLGPYGMNHVQDERVISGAECIDVDIPFLRSYNDQRHNEKFLKELHDCNICFSEYAGSEFIWLPCKHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCAVMIPPGLLKHLLDDTDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSQLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDASDPYGHFRDGSCELFPREMVESWEERINHRQAVGQLQAELFPQRGLACPNCRQYNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSEG 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01389 653 Pfam zinc-RING finger domain 346 391 IPR001841 -
Pumo8g01389 653 SUPERFAMILY RING/U-box 414 476 - -
Pumo8g01389 653 ProSiteProfiles Zinc finger RING-type profile. 346 394 IPR001841 -
Pumo8g01389 653 SUPERFAMILY RING/U-box 598 650 - -
Pumo8g01389 653 Pfam RWD domain 152 285 IPR006575 GO:0005515
Pumo8g01389 653 Gene3D Ubiquitin Conjugating Enzyme 142 293 IPR016135 -
Pumo8g01389 653 SMART RWD2001b 156 291 IPR006575 GO:0005515
Pumo8g01389 653 SUPERFAMILY RING/U-box 505 561 - -
Pumo8g01389 653 SUPERFAMILY RING/U-box 341 425 - -
Pumo8g01389 653 CDD Rcat_RBR_RNF14 504 569 IPR047548 GO:0008270
Pumo8g01389 653 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 187 560 IPR031127 GO:0004842|GO:0016567
Pumo8g01389 653 CDD RING-HC_ITT1-like 340 399 - -
Pumo8g01389 653 MobiDBLite consensus disorder prediction 27 41 - -
Pumo8g01389 653 FunFam RBR-type E3 ubiquitin transferase 142 293 - -
Pumo8g01389 653 FunFam RBR-type E3 ubiquitin transferase 341 425 - -
Pumo8g01389 653 SMART ring_2 346 393 IPR001841 -
Pumo8g01389 653 SMART ring_2 602 631 IPR001841 -
Pumo8g01389 653 SMART ring_2 434 522 IPR001841 -
Pumo8g01389 653 Gene3D - 486 596 - -
Pumo8g01389 653 ProSiteProfiles RWD domain profile. 156 291 IPR006575 GO:0005515
Pumo8g01389 653 SMART ibrneu5 414 472 IPR002867 GO:0008270
Pumo8g01389 653 SMART ibrneu5 501 566 IPR002867 GO:0008270
Pumo8g01389 653 FunFam RBR-type E3 ubiquitin transferase 487 596 - -
Pumo8g01389 653 ProSitePatterns Zinc finger RING-type signature. 363 372 IPR017907 -
Pumo8g01389 653 MobiDBLite consensus disorder prediction 59 90 - -
Pumo8g01389 653 MobiDBLite consensus disorder prediction 1 26 - -
Pumo8g01389 653 Pfam IBR domain, a half RING-finger domain 509 552 IPR002867 GO:0008270
Pumo8g01389 653 Pfam IBR domain, a half RING-finger domain 414 472 IPR002867 GO:0008270
Pumo8g01389 653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 429 IPR013083 -
Pumo8g01389 653 ProSiteProfiles TRIAD supradomain profile. 342 572 IPR044066 -
Pumo8g01389 653 CDD BRcat_RBR_RNF14 425 476 - -
Pumo8g01389 653 SUPERFAMILY UBC-like 150 285 IPR016135 -
Pumo8g01389 653 MobiDBLite consensus disorder prediction 1 124 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01389 330 576 C3H Transcription Factor Family AT2G31770 24.314 1.04e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01389 K11971 - gmx:100500662 1149.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01389 8 46471071 46476418 Pumo8g01389 8 46471071 46476418 ECH