Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01387 ATGTCAGACCGGGGTACCTTCTCCGGTGACTCGGCCGTGGATGATGCTAAGAGCAAAAAGGAACACAAAGTTTCTTTGCTGAAACTCTTCTCTTTTGCTGACTTCTATGACTGTGTCTTAATGGCTCTTGGATCTGTTGGGGCAATTGTACATGGTGCTTCTGTTCCCGTTTTCTTTATCTTCTTTGGAAAGTTGATCAATGTCATAGGCTTGGCCTATCTTTTCCCCAAGGAAGCCTCTCACAAAGTTGCCAAGTACTCGTTGGATTTTGTGTATCTAAGTATAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGAACGGCTTATTTGAAATCAATGTTGAATCAAGATATAAGCCTATTTGATACAGAGGCTTCAACAGGAGAGGTTATTTCTGCCATTACTAGTGACATTATCATTGTTCAAGATGCACTATCCGAGAAGGTAGGGAACTTCATGCACTACATAAGCCGATTTATAGCGGGCTTTGTTATTGGGTTTGTTAGAGTGTGGCAGATCAGTCTAGTGACACTTTCAATTGTCCCCTTGATTGCCCTTGCTGGAGGTCTTTATGCATACGTCACAATTGGCCTTATTGCAAAAGTTCGAAAAGCCTACGTGAGAGCTGGTGAAATCGCTGAAGAGGTGATAGGCAATGTTAGAACGGTCCAAGCATTTGCAGGAGAAGAAAGGGCAGTAAGATCATATAAAGCGGCTCTCATGAAAACTTACGTAAACGGTAGAAAAGCTGGTTTGGCAAAGGGCCTGGGCCTGGGCTCAATGCATTGCGTCCTTTTTCTATCGTGGTCATTGCTTGTTTGGTACACTAGCATTGTTGTTCACAAGAATATTGCCAATGGAGGCGAGTCTTTCACCACCATGCTCAATGTTGTCATCGCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATTTCTGCATTCATTCGAGCAAAGGCAGCAGCATATCCAATTTTTGAGATGATAGAGAGGGACACAGTGAGCAAAAGTAGCTCAAAAACTGGTCGCAAGTTAGGCAAATTGGAGGGTCACATCCAGTTTAAGAATGTCTGTTTCAGTTACCCATCTCGTCCAGATGTAGCAATATTCAACAACCTGTGTCTTGACATTCCTTCAGGGAAAATTGTAGCTCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACTGTCATATCATTGATTGAACGCTTTTATGAACCACTTTCTGGTCAGATACTATTAGACAGGAATGATATCAGGGAACTTGACCTCAAATGGCTTAGGCAACAAATTGGGCTGGTTAATCAAGAACCTGCTCTTTTTGCTACAAGCATCAAGGAGAACATACTTTATGGCAAAGATGATGCCACTCTTGAAGAACTAAAACGTGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGATAGACTAGAAACTCAGGTTGGTGAGAGAGGGATACAACTCTCAGGAGGGCAGAAGCAAAGGATTGCAATATCTCGTGCAATCGTGAAGAATCCATCAATCCTTTTGCTGGATGAAGCAACGAGTGCTCTGGATGCGGAGTCTGAGAAGAGTGTGCAGGAGGCTCTTGATCGTGTCATGGTTGGGAGAACAACTGTTGTAGTGGCACACAGACTCTCTACCATTAGGAATGCAGATGTGATTGCTGTTGTGCAGGGAGGGAAGATTGTGGAAACTGGTAACCATGAAGAGCTCATGTCCAACCCAACTAGTGTATATGCATCTCTTGTTCAACTCCAAGAGGCAGCTTCTCTGCAGCGCCTGCCTTCAGTTGGTCCTAGCATGGGACGCCAACCAAGCATAACCTACTCAAGAGAGCTATCCCGTACAACAACAAGCCTTGGTGGTAGTTTTCGATCAGATAAAGAATCTATTGGCCGAGTTTGTGCTGAAGAATCAGAAACTGCAAGCAAGAAAAGGCATGTTTCAGCAGCAAGACTGTACTCTATGGTTGGTCCTGACTGGTTTTATGGGGTTTTTGGGACCTTATGTGCATTTATAGCTGGAGCACAGATGCCACTTTTTGCACTTGGAATTTCTCACGCACTTGTATCATACTATATGGACTGGGAGACAACATGTCACGAAGTAAAAAAAATTGCATTCCTCTTCTGTGGAGCAGCAGTTATAACTATCACTGTCCATGCCATTGAACATCTTTCTTTTGGAATCATGGGAGAGCGACTTACCCTTCGTGTGAGAGAAATGATGTTTTCTGCTATCTTGAAGAATGAAATTGGTTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCGCAGTTGGAGACTGATGCAACATTATTACGAACTATAGTCGTTGATCGTTCAACAATTCTGTTACAGAATATTGGTTTGGTTGTTGCTTCATTTATTATTGCCTTCATCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACATATCCTTTGGTCATTAGTGGTCATATCAGTGAGAAACTTTTTATGAAAGGCTATGGTGGCAATTTGAGCAAAGCATATCTAAAAGCCAACATGCTGGCTGGGGAGGCTGTGAGCAATATACGCACTGTTGCCGCATTTTGTTCTGAAGAAAAGGTCCTTAACCTTTATGCCAATGAGCTTGTTGATCCCTCCAAACGCTCATTTCAACGAGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTTTTGATGGAAAAGGAGCTTGCTAGCTTTAAATCAATTATGAAGGCATTTTTTGTTTTGATAGTAACAGCACTGGCCATGGGGGAGACATTGGCCCTGGCCCCAGACCTTTTGAAGGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGACAGAAAGTCAGGAATATCATGTGATGTTGGAGAAGAGTTGAAGACAGTGGAGGGAACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTAATTATTTTCAAGGATTTCAATCTAAGAGTTCCTGCAGGCAAGAGTGTTGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCAGTGATCTCCCTCATACTCAGATTTTATGACCCAACATCCGGAAGGGTGTTAATTGATGGAAAAGACATCACAAGACTTAATCTGAAATCTCTTAGGAGACACATTGGTCTTGTGCAACAAGAACCAGCTCTTTTTGCAACATCAATTTATGAAAATATACTTTATGGAAAAGAAGGTGCCTCTGATTCAGAAGTGATTGAAGCAGCTAAGCTTGCCAATGCTCATAGCTTCATCAGTGGTCTTCCTGAGGGCTACTCCACCAAAGTAGGTGAAAGAGGAGTGCAACTATCTGGTGGCCAAAGACAAAGGGTAGCCATTGCAAGAGCTGTTCTAAAGAACCCTGAAATCTTGCTACTTGATGAAGCCACTAGTGCACTTGATGTGGAGTCAGAGCGTGTGGTGCAGCAAGCATTGGACAGATTAATGCAGAGCAGAACAACAGTTATGGTGGCACATAGGCTATCCACCATAAGAAATGCAGACCAAATCTCAGTTTTGCAAGATGGAAAGATAATTGAGCAAGGGACTCATTCAAGTCTTATAGAGAATAAAAATGGAGCATACTATAAATTAGTCAACCTTCAACAACAACAGCATCAATTATAG 3738 0.4267 MSDRGTFSGDSAVDDAKSKKEHKVSLLKLFSFADFYDCVLMALGSVGAIVHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRTAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFVIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWYTSIVVHKNIANGGESFTTMLNVVIAGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKSSSKTGRKLGKLEGHIQFKNVCFSYPSRPDVAIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGGKIVETGNHEELMSNPTSVYASLVQLQEAASLQRLPSVGPSMGRQPSITYSRELSRTTTSLGGSFRSDKESIGRVCAEESETASKKRHVSAARLYSMVGPDWFYGVFGTLCAFIAGAQMPLFALGISHALVSYYMDWETTCHEVKKIAFLFCGAAVITITVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSQLETDATLLRTIVVDRSTILLQNIGLVVASFIIAFILNWRITLVVIATYPLVISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLNLYANELVDPSKRSFQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKAFFVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGISCDVGEELKTVEGTIELKRINFSYPSRPDVIIFKDFNLRVPAGKSVALVGQSGSGKSSVISLILRFYDPTSGRVLIDGKDITRLNLKSLRRHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHSFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQSRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKNGAYYKLVNLQQQQHQL 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01387 1245 ProSitePatterns ABC transporters family signature. 1140 1154 IPR017871 GO:0005524|GO:0016887
Pumo8g01387 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Pumo8g01387 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo8g01387 1245 SUPERFAMILY ABC transporter transmembrane region 669 982 IPR036640 GO:0005524|GO:0016020
Pumo8g01387 1245 SMART AAA_5 392 578 IPR003593 GO:0016887
Pumo8g01387 1245 SMART AAA_5 1028 1214 IPR003593 GO:0016887
Pumo8g01387 1245 FunFam ABC transporter B family member 19 991 1240 - -
Pumo8g01387 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1001 1237 IPR003439 GO:0005524
Pumo8g01387 1245 FunFam ABC transporter B family member 1 28 363 - -
Pumo8g01387 1245 SUPERFAMILY ABC transporter transmembrane region 28 335 IPR036640 GO:0005524|GO:0016020
Pumo8g01387 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 41 338 - -
Pumo8g01387 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 995 1239 IPR027417 -
Pumo8g01387 1245 PANTHER ABC TRANSPORTER B FAMILY 15 606 IPR039421 -
Pumo8g01387 1245 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Pumo8g01387 1245 Gene3D - 363 629 IPR027417 -
Pumo8g01387 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 682 968 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo8g01387 1245 Pfam ABC transporter transmembrane region 43 313 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo8g01387 1245 Pfam ABC transporter transmembrane region 683 954 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo8g01387 1245 FunFam ABC transporter B family member 2 802 998 - -
Pumo8g01387 1245 Gene3D - 991 1245 IPR027417 -
Pumo8g01387 1245 Gene3D ABC transporter type 1, transmembrane domain 89 970 IPR036640 GO:0005524|GO:0016020
Pumo8g01387 1245 Pfam ABC transporter 384 532 IPR003439 GO:0005524
Pumo8g01387 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 603 IPR027417 -
Pumo8g01387 1245 Pfam ABC transporter 1020 1168 IPR003439 GO:0005524
Pumo8g01387 1245 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Pumo8g01387 1245 FunFam ABC transporter B family member 4 355 610 - -
Pumo8g01387 1245 CDD ABC_MTABC3_MDL1_MDL2 1001 1239 - -
Pumo8g01387 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 671 986 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01387 Pumo-Chr8 46435303 46443991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01387 43 609 Calmodulin-binding Proteins AT2G36910 39.130 6.67e-113 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01387 K05658 - gmx:100819045 2337.76