Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01386 ATGGGAAGGTCACCTTGTTGTGAGGAGAATACTAGTGTAAAGAAAGGGCCATGGACACCAGAAGAAGATGAGAAGCTGATTGATTATATCAGCAAACACGGCCATGGCAGTTGGAGAACACTTCCAAAGCGTGCAGGTCTCAATAGGTGTGGTAAGAGCTGCAGATTAAGGTGGACAAACTATCTGAGGCCTGATATCAAGAGAGGCAAATTCACTGAAGAAGATGAGAGAATTATCATCAACCTTCATTCAGTTCTCGGAAACAAGTGGTCGAAGATTGCAGCCCATCTGCCAGGACGAACTGATAATGAGATCAAGAATTATTGGAACACTCACATAAGGAAAAAGCTTCTCAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGATTTGAATCACCTCATGAGTCTTTCTCAGTTGCTTGGCATGTCAAACTTGAGCACTGCTTGGGGCAATAACCCTCTAGGTTTACAAGCAGATATCACTCAGCTAGCAAAAATTCAACTGCTGCAAAATCTCTTGCAAATTATGAACAACAACAATTCATTTGTTAACATGGGCAACAACCCTTACCTCTTAGGCGATCCCAACCTCAACCCTTTATTTCTCAACGGGTTAAACCCCCTCCAAACTAAGGAGCCTGTGGTGTTGAGTGGTAGTGAAGAACATGCTAACCCTGGTGTATTCTCTCAAGCACAAAGTGAGTGCTCTCAGCAGGATGTTTCAAAATCATGGGCAGATTTAGAGGGTGGATCTAATAATCCACAAGATACTGATTACAACAAAATTAGCAGTACTACTTCACATGAAAATCAGGCAGAAAACCCACTTCTTCCTGCATTAGTTGCATCCTCTCCAAGGATGGGAACCTTCAACCAAATGGACAGTGGTTGTAGCATAGCTCAAACGTCCACAGAGTTACCTTCCAACACTTTCTTTGATGATTGGGACAAGTTGCTTGACGATGAAACATGCGGTTCCTATTGGAAAGAGATTCTAGACTTGACATCCACTTCTGCGTCACCAATTTTGTGGTAG 1044 0.4291 MGRSPCCEENTSVKKGPWTPEEDEKLIDYISKHGHGSWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEDERIIINLHSVLGNKWSKIAAHLPGRTDNEIKNYWNTHIRKKLLKMGIDPETHKPRTDLNHLMSLSQLLGMSNLSTAWGNNPLGLQADITQLAKIQLLQNLLQIMNNNNSFVNMGNNPYLLGDPNLNPLFLNGLNPLQTKEPVVLSGSEEHANPGVFSQAQSECSQQDVSKSWADLEGGSNNPQDTDYNKISSTTSHENQAENPLLPALVASSPRMGTFNQMDSGCSIAQTSTELPSNTFFDDWDKLLDDETCGSYWKEILDLTSTSASPILW 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01386 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Pumo8g01386 347 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pumo8g01386 347 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Pumo8g01386 347 Gene3D - 14 67 - -
Pumo8g01386 347 MobiDBLite consensus disorder prediction 242 276 - -
Pumo8g01386 347 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo8g01386 347 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pumo8g01386 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo8g01386 347 SMART sant 14 64 IPR001005 -
Pumo8g01386 347 SMART sant 67 115 IPR001005 -
Pumo8g01386 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 263 - -
Pumo8g01386 347 MobiDBLite consensus disorder prediction 242 277 - -
Pumo8g01386 347 FunFam MYB-related transcription factor 14 67 - -
Pumo8g01386 347 CDD SANT 70 113 IPR001005 -
Pumo8g01386 347 FunFam Transcription factor MYB39 70 131 - -
Pumo8g01386 347 Gene3D - 69 136 - -
Pumo8g01386 347 CDD SANT 17 62 IPR001005 -
Pumo8g01386 347 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01386 Pumo-Chr8 46421150 46423471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01386 1 336 MYB Transcription Factor Family AT5G16770 46.944 2.77e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo8g01386 Myb_DNA-binding 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01386 K09422 - gmx:778082 573.548