Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01382 ATGGGTAAGAAGAAACAGAAGGACCCGCAACAATCCTCCGAAACCGACACCGTTTCAACCCCTTCCAGCATTTTCAGCAAGCTCTTCGCCAACGCGCCGGAACAGGCCGCCACCGCCGCCTCTCTATTTTCCGATGACAACCCATTTCGCAGAAAACCCGCTCCACGTTCGGACTCAACAAACCGCCCTCATAACCCTAACAACGGCGACAACCCCGTGAGCACCGATTCCGGCGAGGAGAAGAAGCGGAAGAGGAACAAGGACAAAACCCCAGCCCCAGCCCTCGATCCCGTTTCTGTAATCGAGGCTTCGGAGAAATCGGAGAAGAAGAGGAAGCGCGGTTCCGACGAAGGAAGAGACCTTAATGTGGGTGCAGAAGCAATTGGGAAGAGGAAAAGGAAAAGGGAGGAAGTTGAGAGAGAGTGGGAGGAGAAGAAGTATGGGAGTGTGGAGGAAGGGATTGAGAATAAAACTGTTGGGATCAAGAGGAAGGCGTTGGATGATCCAGCTGATATGATGGTTTCAAAGGAGGGTTTTGATGACGAGGATAAGCTTCTGAGGACTGTTTTTGTTGGGAATTTGCCCCTCAAGGTGAAAAAGAAGACTCTTTTGAAGGAGTTTAAGAAGTTTGGTGAGGTTGAGTCTGTGAGGATTCGTTCTGTCCCAATACAAGATACCAAGAAGCCTAGGAAGGGAGCTATCCTCGCGAAGAAAATAAATGATGCTGCTGATAGTGTTCATGCATACATTGTTTTCAAAACAGAGCAATCGGCACAGGCTTCTTTGTCACACAACATGTCACTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGGGAGAGTGCTCCACTTTATGATAATAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAGCTTTATCAGTTATTTTGTGGTATATCCAACCTGGAATCAAGTATAGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAAACAAAGGACGCTGCTAAGTTTGTTGTTAAGAAACGGAACTTGAAGCTTCGAGGCCGAGAGTTGAGACTCTCTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGCCAAACCCATCATCAGCACATGCTCCTAGCACCCCTGCAAAAAGGCCAAACACATCATCAGCACATGCTCCTAGTACCCCTGCAAAGAAGTTTTCTGTGGCTTCACGGTCTCCATCAAGCAGCAATAACAAGTCAAACAGAAAAGCCAATGCATCTTATCAGGGTCTACGTGCAACCAAATCTGATGTGCACAAGAAAATCCAAGTCCAAGGAGGAGAAAAATCAAAAGAACGCAAGACAAAAAGACCTTCAGTAGCTGCCAGAAAGGCTAAAACAAAAATGGTCAAGGAGAGTGGTGTACCAAAACAAGCTGGGGTGAAACGCAAGCTTGATAGTCGTACTCCAGACAGCACCCTACGTAATAGGAAAGTCAAAAAGAACAGGTAG 1545 0.466 MGKKKQKDPQQSSETDTVSTPSSIFSKLFANAPEQAATAASLFSDDNPFRRKPAPRSDSTNRPHNPNNGDNPVSTDSGEEKKRKRNKDKTPAPALDPVSVIEASEKSEKKRKRGSDEGRDLNVGAEAIGKRKRKREEVEREWEEKKYGSVEEGIENKTVGIKRKALDDPADMMVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKHKGESAPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSIEAVRVVRDPHLNVGKGIAYVLFKTKDAAKFVVKKRNLKLRGRELRLSHAKADATPSKRPNPSSAHAPSTPAKRPNTSSAHAPSTPAKKFSVASRSPSSSNNKSNRKANASYQGLRATKSDVHKKIQVQGGEKSKERKTKRPSVAARKAKTKMVKESGVPKQAGVKRKLDSRTPDSTLRNRKVKKNR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01382 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 379 IPR000504 GO:0003723
Pumo8g01382 514 Gene3D - 292 386 IPR012677 -
Pumo8g01382 514 MobiDBLite consensus disorder prediction 59 74 - -
Pumo8g01382 514 MobiDBLite consensus disorder prediction 384 443 - -
Pumo8g01382 514 MobiDBLite consensus disorder prediction 102 146 - -
Pumo8g01382 514 SMART rrm1_1 299 375 IPR000504 GO:0003723
Pumo8g01382 514 SMART rrm1_1 188 277 IPR000504 GO:0003723
Pumo8g01382 514 CDD RRM1_RBM34 187 277 - -
Pumo8g01382 514 MobiDBLite consensus disorder prediction 445 466 - -
Pumo8g01382 514 MobiDBLite consensus disorder prediction 75 91 - -
Pumo8g01382 514 MobiDBLite consensus disorder prediction 12 29 - -
Pumo8g01382 514 CDD RRM2_RBM34 299 375 IPR034221 -
Pumo8g01382 514 SUPERFAMILY RNA-binding domain, RBD 180 287 IPR035979 GO:0003676
Pumo8g01382 514 MobiDBLite consensus disorder prediction 476 508 - -
Pumo8g01382 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 231 IPR000504 GO:0003723
Pumo8g01382 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 373 IPR000504 GO:0003723
Pumo8g01382 514 MobiDBLite consensus disorder prediction 1 146 - -
Pumo8g01382 514 SUPERFAMILY RNA-binding domain, RBD 291 388 IPR035979 GO:0003676
Pumo8g01382 514 Gene3D - 183 287 IPR012677 -
Pumo8g01382 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 281 IPR000504 GO:0003723
Pumo8g01382 514 MobiDBLite consensus disorder prediction 370 514 - -
Pumo8g01382 514 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 278 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01382 Pumo-Chr8 46394652 46398504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01382 299 376 Eukaryotic Initiation Factors Gene Family AT2G23350 32.911 1.66e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01382 K14837 - gmx:100784494 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01382 8 46394652 46398504 Pumo8g01382 8 46394652 46398504 ECH