Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01379 ATGCAAACGACCAAGTACGATGTCTTCGCCAGAATCAAAGCAGATAACTCTGAAACCCTACCACCACCACCCCCACCGCCACAAATCACCGCCTCAACGCTAATATTCTTCACCATCGCGGTGGTTGTGTTCTGCTTCGTAGGGTTCAGCATTCTCTTCTTCTGCAGGTGCTGTTTCGTGAACATAAACTCGACCACCCTCGTTCACCTTTCTCCCAATGCTTCTCCTTTCAGAGGCCTCGAGCCTTCGTTGCTGCAGTCGTTCCCCACGTTCCTCTACGCCACCGTGAAGGATCTCCGCAGGGAGAAGAAGTATTCCCTTGAATGCGCCATTTGCTTGTTGGAGTTCGACCACGACAGCATGCTGCGACTCTTAACCGTTTGCTACCATGTGTTTCACCAAGAGTGCATCGATTTATGGCTCCGTTCACACAAGACTTGCCCCGTTTGTCGCACGGATCTTGAGTCATCGATAACACATAACGAAACGCAAAAGTCTCCTGAACAAAACGAGGACAATGTAGAACAAGAGAGCACGGGTCATCATCACGTGTGCATTGATGTAAAAGAAGGTGAAGCAGATCAGAGACATGGTAATGGTGATGGGGGAGTTTCGACGAGTGTGAGCATGCAGGAACAGAAGTTTGAATTTTCACGTTCACACTCAACTGGGCATTCCATAGTTATGGTTAGAGGTGAAGGAAGAGATGATGATGATAAATATACGTTGAGATTGCCGGAGAATGTGGCGTTGAAACTTGTAAAGGGAGGGCACAGCTACTCCAAGAGTTGTTCTAGTTCCAAAGATATGGCAAGGTTTGCTGCCCCTTGCAGGAATTGTGGTTATGTTCAAACTGTATTTGACAGCTCCTCATCCCGTAATGGTAGTATAAAAAACATTTAA 903 0.4718 MQTTKYDVFARIKADNSETLPPPPPPPQITASTLIFFTIAVVVFCFVGFSILFFCRCCFVNINSTTLVHLSPNASPFRGLEPSLLQSFPTFLYATVKDLRREKKYSLECAICLLEFDHDSMLRLLTVCYHVFHQECIDLWLRSHKTCPVCRTDLESSITHNETQKSPEQNEDNVEQESTGHHHVCIDVKEGEADQRHGNGDGGVSTSVSMQEQKFEFSRSHSTGHSIVMVRGEGRDDDDKYTLRLPENVALKLVKGGHSYSKSCSSSKDMARFAAPCRNCGYVQTVFDSSSSRNGSIKNI 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01379 300 SUPERFAMILY RING/U-box 95 157 - -
Pumo8g01379 300 FunFam E3 ubiquitin-protein ligase ATL6 69 157 - -
Pumo8g01379 300 MobiDBLite consensus disorder prediction 158 180 - -
Pumo8g01379 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 158 IPR013083 -
Pumo8g01379 300 SMART ring_2 109 150 IPR001841 -
Pumo8g01379 300 Pfam Ring finger domain 108 151 IPR001841 -
Pumo8g01379 300 PANTHER RING FINGER DOMAIN-CONTAINING 27 162 - -
Pumo8g01379 300 MobiDBLite consensus disorder prediction 165 180 - -
Pumo8g01379 300 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01379 Pumo-Chr8 46362001 46362903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01379 28 255 Rapid Response to Elicitors AT3G05200 34.728 5.05e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01379 - - gmx:102667137 439.884