Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01378 ATGGCTTCTCTAGGCAACCCAAAAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGATTTTGTAGCTTGTATTGCCCACAGTGGTGTTATGTAATCTACCCTCCTCCTCCTCCCTTTGAATTTCCTGATGATGATTCAAGTCCAAATTTCTCACCTCTAGTTATTGCAGTCATTGGGGTCTTGGCCAGTGCTTTTCTCCTTGTGAGTTACTACACCATAATATCCAAGTACTGTGGCAGCAGAGAATCTTCACAAAGCGAAGACCACGAAGAAAACGTTGAATTGGAAGAGGATCATAACCCTTCACTCCACGAGCCTTGGCATGCTCCAACCATTGGCTTAGATGAGGCTTTGATTAAGGCCATAACAGTTTGCAAGTACAAGAAAGGTGATGGGTTGGTTGAGGTGACAGATTGCTCCGTTTGTCTCAGCGAGTTTCAAGATGATGAAAGTGTTAGACTCTTGCCTAAATGCAGCCACGCTTTTCATCTCCCTTGCATTGACACGTGGCTCAAATCTCACTCTAGTTGCCCTCTATGTCGTGCTAGCATATTCACCTTCAATGCTGCAGCACTTCATGTTGCTGCCCCAGTCATGGAACCCTCTTCAAGGAACGAAACTTCTTCTTCAGAAAACCAACGTGCAGATGAAAACGTTGCTGTGGCAAGGGACGGTGAATTGGATGCTGTGGAAGGAGAAGTGACGCATGGTGGAGCAGTTTCAAAGAGTGCATTGCGTGCTTTGAGTGATCTAGGCAATTTGAGAGGGAGGCATAGTGTAATTGAGATTAGAGATGAAGACTATGATTCCATCAGAAGGACAGTTTCTATGGACCATTCGTTTCAAAGGGGTAGTGGTCTTTCAATTGCTGATGTTCTGCATGTGAATCAAGAGCATGAAGGATGTTCTAATGGGGCTGGTCCATCAAAGGGATCAAGAGGTGAGAGTAGCAAGCCTAGCTATAGAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCTAGTGGAAGGTTCTCCCTTAGCAGAAATGGCAGAGGAAGGCAATGGGTTCTGCCAGTCTGA 1089 0.4481 MASLGNPKSWVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPDDDSSPNFSPLVIAVIGVLASAFLLVSYYTIISKYCGSRESSQSEDHEENVELEEDHNPSLHEPWHAPTIGLDEALIKAITVCKYKKGDGLVEVTDCSVCLSEFQDDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAAALHVAAPVMEPSSRNETSSSENQRADENVAVARDGELDAVEGEVTHGGAVSKSALRALSDLGNLRGRHSVIEIRDEDYDSIRRTVSMDHSFQRGSGLSIADVLHVNQEHEGCSNGAGPSKGSRGESSKPSYRRRVLHCVLSPIAMKRSFSSGRFSLSRNGRGRQWVLPV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01378 362 FunFam RING-H2 finger protein ATL54 117 190 - -
Pumo8g01378 362 PANTHER RING-H2 FINGER PROTEIN ATL16 41 326 IPR044600 GO:0016567|GO:0016740
Pumo8g01378 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Pumo8g01378 362 Pfam Ring finger domain 141 184 IPR001841 -
Pumo8g01378 362 SMART ring_2 142 183 IPR001841 -
Pumo8g01378 362 CDD RING-H2_EL5-like 141 184 - -
Pumo8g01378 362 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Pumo8g01378 362 SUPERFAMILY RING/U-box 126 190 - -
Pumo8g01378 362 MobiDBLite consensus disorder prediction 302 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01378 Pumo-Chr8 46344246 46346146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01378 6 362 C3H Transcription Factor Family AT5G17600 42.933 9.61e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01378 - - gmx:100792267 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01378 8 46344246 46346146 Pumo8g01378 8 46344246 46346146 ECH