Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01377 ATGGCTACTTTAGAATCAGCTCTCACCCTCTTCGCACCTCAACGGTTTTCCAATAGCTATCGTTTCTCTGCAAAAGCACCAATCTCCATTAAGCTCCATGCTTCCACCTCCCTTCTCTTCTCTTCCAAGGTCTCTTTGAAAAGCGAAAGACTCTGCTTCCAGTTATGCTCCACTTTGCAAGAGGTAGCAGCAACAGAAGAAACACCTGGGCCAACCCAACCAACAGACAACGTAAAGAAGCTCTACGTGGTTAACTTGTCTTGGTCTCTGGCGGCGGCAGAAATCGAGGACCTCTTTGCCCAATGCGGAACCGTAACCGACGTCGAGATAATAAAGAACAGAGATGGGAGGAGCAAGGGCTATGCCTTCGTTACTATGGCTTCCGGGGAAGAGGCTCAGGCTGCTGTTAATAAATTTGACTCTTATGAATTATCAGGACGGATAATAAGGGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCTCCACCTCCTCCAGGTCCCCGTCCTGGAGAGACACGTCATGTAATTTATGCATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGACAAGTCTTCGCTGAAAATTTCAAAACACCATCTTCAGCCAGGGTTGTCTTTGACAGCCCTTCTGGACAATCTGCTGGGTATGGATTTGTTTCTTTTCTTACCAAGGAGGATGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAATTCAGTGAAAAGAAAGATAAAGAAGCTGGAAGTGAAAAAGATGAAGACCAAGTTAAAGATGCTGGAAGTGAAGAAGATGAAGACCAAGGTTCTGATGCTCAACCGGAAGAATAA 867 0.4637 MATLESALTLFAPQRFSNSYRFSAKAPISIKLHASTSLLFSSKVSLKSERLCFQLCSTLQEVAATEETPGPTQPTDNVKKLYVVNLSWSLAAAEIEDLFAQCGTVTDVEIIKNRDGRSKGYAFVTMASGEEAQAAVNKFDSYELSGRIIRVELAKRFKKPPPPPPPPGPRPGETRHVIYASNLAWKARSTHLRQVFAENFKTPSSARVVFDSPSGQSAGYGFVSFLTKEDAEAAISTVDGKELMGRPLRLKFSEKKDKEAGSEKDEDQVKDAGSEEDEDQGSDAQPEE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01377 288 MobiDBLite consensus disorder prediction 246 288 - -
Pumo8g01377 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 249 IPR000504 GO:0003723
Pumo8g01377 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Pumo8g01377 288 CDD RRM_SF 81 152 - -
Pumo8g01377 288 SUPERFAMILY RNA-binding domain, RBD 69 172 IPR035979 GO:0003676
Pumo8g01377 288 SUPERFAMILY RNA-binding domain, RBD 158 258 IPR035979 GO:0003676
Pumo8g01377 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 255 IPR000504 GO:0003723
Pumo8g01377 288 SMART rrm1_1 80 152 IPR000504 GO:0003723
Pumo8g01377 288 SMART rrm1_1 177 251 IPR000504 GO:0003723
Pumo8g01377 288 MobiDBLite consensus disorder prediction 246 269 - -
Pumo8g01377 288 Gene3D - 54 160 IPR012677 -
Pumo8g01377 288 Gene3D - 161 266 IPR012677 -
Pumo8g01377 288 MobiDBLite consensus disorder prediction 270 288 - -
Pumo8g01377 288 PANTHER OS02G0815200 PROTEIN 32 256 - -
Pumo8g01377 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01377 Pumo-Chr8 46336469 46340302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01377 81 264 Eukaryotic Initiation Factors Gene Family AT2G23350 25.806 4.48e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01377 - - gmx:100793319 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01377 8 46336469 46340302 Pumo8g01377 8 46336469 46340302 ECH