Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01367 ATGGCCTCTGATGACTTCAACGATAAGAACATTGTGTTTCGGAAGCTCAAAGCAAAGTCTGAAAACAAGATGTGTTTCGATTGTAATGCGAAGAACCCAACTTGGGCCTCTATCACCTATGGGATCTTCCTTTGCATTGATTGCTCTGCTGCTCATCGCAGCCTTGGTGTCCATATCAGTTTTGTTAGATCTATAAATTTAGACTTATGGAGCCCAGAGCAATTAAGAGTGATGACCTTCGGAGGAAACAATCGTGCACGATTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAATATACCTCACGAGCTGCAGAGTTATACAGACAAATTATTTCGAAAGAAGTAGCTAAAAGTATGATTAGGGATGCAGGTTCACCATCATCACCTGTTGTTTCTCAGTCTAAACAAGTTGTTGAAGGACTTCCTCAAGTAAGGACCAATGAATTACCAAAGGGAAATACTTTGCAAAAGCCTGAAATGCTAGAGAACACTTCTTCACCTAGAGCTTCACATTCAATAGTTTTCAATACTGTCAAAAAACCTATCGGTGCTAAAAAAATTGGGAAAATTGGGGGACTTGGTGCTAGAAAGCTTACTAAAAAGATTCAAGAATCCGATGAAGCTAGAAGGAAGTTTTCAAATGCTAAGTCTATTTCTTCATCCCAATTTTTTGGAGATCGAAACAAACCTACAAATGATGCTCAAGTTTCTTTGTCAAAGTTTTCAGCTTCAACTTCCATCTCTAGTGCCGATCTTTTTGGTAACTCAACAAATAACTCTTTCATTGATCTTGATGGTAATGACCTCCTTAATCGACTATCTTTTCAGACTCATGGAGACATATCTTCTCTTAAAAATATTGCTGGAGAGACTGGGAAGAAACTTAGCTCATTGGCATCCACTTTGATAACGGATTTTCAGGACCGAATACTCTAA 954 0.3847 MASDDFNDKNIVFRKLKAKSENKMCFDCNAKNPTWASITYGIFLCIDCSAAHRSLGVHISFVRSINLDLWSPEQLRVMTFGGNNRARFFFKQHGWTDGGKIEAKYTSRAAELYRQIISKEVAKSMIRDAGSPSSPVVSQSKQVVEGLPQVRTNELPKGNTLQKPEMLENTSSPRASHSIVFNTVKKPIGAKKIGKIGGLGARKLTKKIQESDEARRKFSNAKSISSSQFFGDRNKPTNDAQVSLSKFSASTSISSADLFGNSTNNSFIDLDGNDLLNRLSFQTHGDISSLKNIAGETGKKLSSLASTLITDFQDRIL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01367 317 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 207 - -
Pumo8g01367 317 Gene3D Arf GTPase activating protein 1 135 IPR038508 -
Pumo8g01367 317 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Pumo8g01367 317 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Pumo8g01367 317 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Pumo8g01367 317 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Pumo8g01367 317 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 115 IPR001164 GO:0005096
Pumo8g01367 317 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Pumo8g01367 317 SUPERFAMILY ArfGap/RecO-like zinc finger 12 126 IPR037278 -
Pumo8g01367 317 MobiDBLite consensus disorder prediction 153 173 - -
Pumo8g01367 317 CDD ArfGap_ArfGap1_like 12 123 - -
Pumo8g01367 317 Pfam Putative GTPase activating protein for Arf 12 100 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01367 Pumo-Chr8 46177303 46183056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01367 13 91 C2H2 Transcription Factor Family AT4G21160 45.000 1.13e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01367 K12493 - gmx:100789796 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01367 8 46177303 46183056 Pumo8g01367 8 46177303 46183056 ECH