Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01366 ATGAATCTGTGGACGGACGAGAACTCCTCGGTGATGGAGGCCTTCATGTCGTCCTCCGATCTCTCCTCCATATGGCCCCCGCCGGCGCCGCCGCAATCCACCGCTGTCTTCAATCAGGACACGCTCCAGCACCGCCTCCAGGCGCTGATCGAGGGCGCCAGAGAGAGCTGGACCTACGCCATATTCTGGCAGTCCTCTTATGACTATTCTGGTTCCACGCTCCTCGGTTGGGGCGACGGTTACTACAAAGGCGATGACGACAAAGCCAAAGCAAAAGCCAAAGCCAAGGCCAAGGCCACCTCCGCCGCGGAGCAGGACCACCGTAAAAAGGTCCTCCGCGAACTCAACTCCCTCATCTCCGGCTCCTCATCCGCCGTCTCCGACGACGTCGACGAGGAAGTCACCGACACCGAGTGGTTCTTCCTCGTCTCCATGACGCAGTCCTTTGTCAACGGCGGTGGGTTGCCCGGACAGGCCTTCTTCAACTCCGCCCCGGTCTGGGTCACCGGCGGCGACCGCCTCTCTGCCTCGCCCTGCGAGAGGGCGAGGCAGGGACACGTGTTCGGCTTGCAAACCCTAGTCTGCATACCGTCCGCAAACGGCGTCGTTGAGCTGGGGTCCACCGAGTTAATTTTCCAGAACCCGGATCTGATGAACAAGGTGAAGGTTCTCTTCAATTTCAGCAACAACAACTTCGACATGGGTTCTTCTTGGCCCGCCACCAGCGCCGATCAAGGGGAGAACGACCCTTCCTCGCTCTGGCTCAGCGATCCCGAAGTTAGGGATTCCATTAACACTGTCGCAGCTACCCCTTCGGTTACGGTTCCTGCACAGACTCCGGGAATTTCAATTTCCAAGACGATGCAGTTGGAGAGTTCCATTCAAACCCCGGGTTCGAGTACTTTAACCGAAACCCCTAGTTCTATCCACGCGATTCCGCAGAACCAGAGCGTGTTCTCCAGAGAATTGAACTTCTCTGAGTACGGTTTCGACCCCAAGAGTGGGAGCAATCAGAATCACCATTCTCTGAAGCCGGAATCCGGCGAGATTCTCAGCTTCGGCGAGAGCAAGAGAACCTCTTACGGCGGCGTCAATGGGAATACCAATACCAATTCCCATTTCTTCTCCGGCCAGTCACCGTTTGTTGTTGCTGCGGATGAGAACAACAACAACAACAGTAACATTAACAATGTTAAGAGAAGGTCGCCGAATTCGCGCGGCAGCAACGACGACGGAATGCTCTCCTTCACCTCCGCCGTGATTCTTCCGGCCACGAATTTGAAGTCCGGCGGCGGCGGCGATTCCGACCACTCGGATCTGGAGGCTTCGGTGGTGAAGGACCCGGTGGTGGAGCCGGAGAAGCGGCCCCGGAAGAGAGGGCGGAAGCCGGCGAACGGAAGAGAGGAACCATTAAACCATGTTGAAGCAGAAAGACAGAGGAGGGAGAAGCTGAACCAGAGGTTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCAAAGATGGACAAAGCGTCGCTTCTCGGCGACGCCATATCCTACATCACGGAGCTGAAGTCCAAGCTTCAAAGCCTCGAATCGGATAAAGACGGGTTGCAGAAGCAGCTCGAAGGAGTGAAGAAGGAGCTTGAGAAAACAACCGAAAACGTTTCTTCTAATCACGCGTGTAATAGTAGTAGTAATAATAACAACAAGTTGTCGAATCAGGCGTTGATTGACTTGGACATTGACGTGAAGATAATTGGGTGGGACGCGATGATAAGGATCCAATGCAGCAAGAAGAACCACCCCGCGGCGAGGTTGATGGCGGCGCTGATGGAGTTGGACTTGGACGTGCACCACGCCAGCGTGTCGGTGGTCAACGATTTGATGATCCAACAAGCAACGGTGAAGATGGGGAGTAGGTTTTACACGCAGGAGCAGCTTCGTTCGGCGCTGTCGGCTAAGGTTGGGGATGTACGATGA 1962 0.5561 MNLWTDENSSVMEAFMSSSDLSSIWPPPAPPQSTAVFNQDTLQHRLQALIEGARESWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSSAVSDDVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAFFNSAPVWVTGGDRLSASPCERARQGHVFGLQTLVCIPSANGVVELGSTELIFQNPDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSSLWLSDPEVRDSINTVAATPSVTVPAQTPGISISKTMQLESSIQTPGSSTLTETPSSIHAIPQNQSVFSRELNFSEYGFDPKSGSNQNHHSLKPESGEILSFGESKRTSYGGVNGNTNTNSHFFSGQSPFVVAADENNNNNSNINNVKRRSPNSRGSNDDGMLSFTSAVILPATNLKSGGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQSLESDKDGLQKQLEGVKKELEKTTENVSSNHACNSSSNNNNKLSNQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSAKVGDVR 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01366 653 Coils Coil 514 548 - -
Pumo8g01366 653 PANTHER MYC 12 648 IPR045084 GO:0003700|GO:0006355
Pumo8g01366 653 MobiDBLite consensus disorder prediction 427 478 - -
Pumo8g01366 653 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 517 IPR011598 GO:0046983
Pumo8g01366 653 Pfam Helix-loop-helix DNA-binding domain 472 517 IPR011598 GO:0046983
Pumo8g01366 653 SMART finulus 474 523 IPR011598 GO:0046983
Pumo8g01366 653 MobiDBLite consensus disorder prediction 387 412 - -
Pumo8g01366 653 FunFam Transcription factor bHLH13 461 535 - -
Pumo8g01366 653 MobiDBLite consensus disorder prediction 439 478 - -
Pumo8g01366 653 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 225 IPR025610 -
Pumo8g01366 653 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 471 536 IPR036638 GO:0046983
Pumo8g01366 653 CDD bHLH_AtAIB_like 465 541 - -
Pumo8g01366 653 Gene3D - 460 550 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01366 Pumo-Chr8 46147132 46149801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01366 1 650 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.038 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g01366 bHLH-MYC_N 5.7e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01366 K13422 - gmx:100776289 1089.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01366 8 46147132 46149801 Pumo8g01366 8 46147132 46149801 ECH