Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01355 ATGTCACCGCCGGCGGTGGTAACGGAGGAGGAGGGGCGGAGCAAGGTGTCGTCGACCGTGGCGTCTGGTTCTTCACAATCCTTGGACTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCTTCTACTGTTCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCCGGATCCCAATCACCTGAAAGGGATCCGGACCTTTTCTCTTTAAGCTCAGCAAAGCTTGATGAGAAGCCATTGTTCCCTTTGCTTCCTACAAAAGATGGGATATGTTCGTCGGGGCCGAAAACTGTTGTTTCGGGCAACAAGAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTTGCTGGTAATACCGGGATGAATGCGATGCTATCACCTAGGCCTTCTGGAGCTCAGCCTTCTGCTATGAAAGAAATACCAAGCAAGTGTCAAGAACGGCCTTGTTCAACTAATAATGGAACCGGTCATAACCATACAGGTGCTTCTATCAGTGGCAGTGCCCCGGCTTCTAAGGCACAGGTTGTTGGATGGCCTCCTATAAGATCATTTAGGAAAAACTCGATGGCCACCACGACTAACAAGAACAATGATGAAGTGGATGGAAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATCTTAGGAAGGTAGATCTAAGAAGCTATACCACATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGTAAGCTGAGGGATCTTCTACACGGTTCTGAGTATGTCCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTCATTGACACTTGCAAAAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGTTTAGCTCCCAGGGCCATGGAGAAGTCCAAAAGCAGGAGTTAG 1074 0.4758 MSPPAVVTEEEGRSKVSSTVASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPSLCDEKKENMNLKATELRLGLPGSQSPERDPDLFSLSSAKLDEKPLFPLLPTKDGICSSGPKTVVSGNKRGFADTMDGFSQGKFAGNTGMNAMLSPRPSGAQPSAMKEIPSKCQERPCSTNNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTTNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01355 357 MobiDBLite consensus disorder prediction 174 199 - -
Pumo8g01355 357 MobiDBLite consensus disorder prediction 1 26 - -
Pumo8g01355 357 MobiDBLite consensus disorder prediction 173 201 - -
Pumo8g01355 357 Pfam AUX/IAA family 75 348 IPR033389 -
Pumo8g01355 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 70 344 IPR003311 GO:0005634|GO:0006355
Pumo8g01355 357 MobiDBLite consensus disorder prediction 12 26 - -
Pumo8g01355 357 FunFam Auxin-responsive protein 232 349 - -
Pumo8g01355 357 Gene3D - 233 351 - -
Pumo8g01355 357 ProSiteProfiles PB1 domain profile. 237 341 IPR000270 GO:0005515
Pumo8g01355 357 SUPERFAMILY CAD & PB1 domains 236 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01355 Pumo-Chr8 45979595 45984084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01355 239 342 B3 DNA Binding Superfamily AT5G37020 32.692 4.57e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pumo8g01355 AUX_IAA 1.8e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01355 K14484 - gmx:547502 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01355 8 45979595 45984084 Pumo8g01355 8 45979595 45984084 ECH
Pumo8g01355 8 45979595 45984084 Pumo4g02497 4 40671196 40672385 PCT