Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01352 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTACTTGCTCCAAGAAAAGACACTTGGAGTGCTTTGTCCACTGGGTTGAATGAGTTACTCCCTAGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCAAGGTTTAGCCACTTTGAATCCCTCATTTGCTGCATTTTCAACTCCACTAGACCACAGATTTGAATGTCTTTATGGAAGTGAAGCAGCATACCCTTTTGTTGATGGCTTCACATTGCCAGAGCTTGATTCATCATACACCAGGAATGATGAGTCAGCACCACTTTTGCCACAAGAAGATAACCCATCATTGGAGGATGAAGAGTTTGGCTTTCTGGGAAGTGAAAACCAGAGTTTGGAACTAGCAAAAAATGGCTGCAAAATTGAGGAACAAGTGACAGAGATTCCAGTCTTCAACATGGGCTTGTGTGGAGAGAAAAAGCCAAAATCAAAGAAACTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTGCCTAAGATTAGCAAGATGGACAGGACCTCCATTCTTGGAGACACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAATGGAGGAGGGACCAAATCATATAAACCTCTTAGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGAAGAGATCAGGACACAAGGATTAGCATCTGCTGTGCCACAAAGCCGGGATTACTACTGTCCACAGTGAACACCTTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGTAGCAGAGCAGAGAAATTGTATGAGCCCGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATGTCTCTAG 996 0.4267 MELSQLGFLDELLAPRKDTWSALSTGLNELLPSGWSFDSFDENQGLATLNPSFAAFSTPLDHRFECLYGSEAAYPFVDGFTLPELDSSYTRNDESAPLLPQEDNPSLEDEEFGFLGSENQSLELAKNGCKIEEQVTEIPVFNMGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGPNHINLLGISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCSEVAEQRNCMSPEEIKQALFRNAGYGGRCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01352 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 219 IPR036638 GO:0046983
Pumo8g01352 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 125 325 - -
Pumo8g01352 331 Gene3D - 166 242 IPR036638 GO:0046983
Pumo8g01352 331 CDD ACT_UUR-ACR-like 257 298 - -
Pumo8g01352 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Pumo8g01352 331 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Pumo8g01352 331 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01352 Pumo-Chr8 45940923 45942455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01352 149 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 70.652 3.72e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g01352 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01352 - - gmx:100806571 619.772