Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01346 ATGACTCAACCCAATGGCCATCATCGTGTTGATCAAACAGTGATTGACATTAAGAAGCCACCGAAGAAGAAGGTTGAGGGGAAGTGGTCGAATGAAGAGGTGGACCTGCTGCATGATATCACTAGCTATGCACCAAAGGGTTGCATCACTGCAGTGATGGGCCCTAGTGGTGCAGGAAAGTCCACTCTCTTGGATGGCCTTGCTGGGAGGATTGCGAGTGGGAGCCTCAAAGGTAGGGTCTCCTTGGATGGAGCAACTGTGAGTGCAAGCTTGATCAAAAGAACTTCTGCATATATCATGCAGGAGGATAGGCTCTTCCCAATGCTCACTGTCTATGAGACTTTGATGTTTGCTGCTGATTTTCGTCTGGGGTCTCTTTCACTTGCTGATAAGAGGCAGAGGGTGGAGAAGCTCATTGACCAGCTTGGCTTAACGACATCCCGAAACACCTACATAGGAGACGAAGGCACCAGAGGCATCTCCGGTGGAGAGCGGCGGCGTGTCTCAATCGGCGTGGACATCATCCACGGCCCATCCCTCCTCTTCCTGGACGAGCCAACCTCGGGGCTAGACTCCACGAGCGCCAACAGCGTGATCGAGAAGGTGCACGACATCGCCCGCAGCGGCAGCACCGTGATCCTCACCATCCACCAGCCCTCCTCCAGAATCCAGCTCCTCCTCGACCACCTCATCGTCCTGGCACGCGGTCAGCTCATCTTCCAAGGTTCCCCCCAAGACGTGGCCCTCCACTTGAACCGCATGCCCCGCAAAGTCCCCAAGGGAGAAAACCCCATCGAGCTTCTCATTGATGTGATACAAGAGTATGATCAGTCCGAAGTTGGAGTTGAGGCTCTTGCTGAGTTTGCACGCACTGGAGTGAAGCCACCTCCTTTGTCTGATCAACAGCACTCGCTGTCTTCTGCTCCGCCCTCGCACCTCAGCCATATGTATGAGGAGAAATCTCAGGACTTCTCTCGCTCGTCGCAAGTGAGTAGAAGGGCGCTAGATGACTTTGATCACAGTCTCAGAAGTCCCTATAACAACACATCCATCTCGTGGAGCACTGGGAATAGTGCGGCCTTTCTGAAATTCACACCTTCGCGACTTAGGAATGATCACAAGCTGCAGAATACCACAAGAACCAATGCTTCCCCTGGCTACTACACATACTCGAGTGAAATCCTCCAAGCCACTCCAACACCCCATAGCAGCGACTACACAGTGAATGAGAACGACTACCTCACTCCCTCAAACGCCACACAGGAACACCTTGGCCCAAAGTTTGCAAATTCTTACCTAGCAGAGATTTGGATACTCATGCGGCGCAACTTCATAAACATAAGGCGCACCCCTGAGCTTTTCCTCTCAAGACTGATGGTGCTCACCTTCATGGGCTTCATGATGGCCACCATGTTCCACACCCCCAAACAAAATCTGCAAGGAATCACCAACCGCCTCAGCTTCTTCATCTTCACGGTGTGCCTCTTCTTCTTCTCCTCCAACGACGCCGTCCCGGCCTTCATCCAAGAGAGGTTCATCTTCATAAGGGAAACCTCTCACAACGCCTATAGGGCTTCCACTTACACCATAGCAGGCCTAATCACTCACATGCCGTTTATTCTTCTCCAAGCAACTGCTTATGCACTCATTGTTTGGTTTGCCCTAAAACTTCGAGGCCCTTTTCTTTACTTCTTGCTTGTTCTCTTCGTTTCTCTTCTTTCAACCAATTCGTTTGTGATGTTTGTGAGTTCAGTGGTGCCAAACTACATCTTGGGCTATGCTATGGTTATTGCCTTCACTGCCTTGTTCTTCTTGTTCTGTGGATACTTCTTGAACAGCCATGACATCCCCTCTTATTGGCATTGGATGAACAAAATCTCAACCATGACATACCCTTATGAGGGGCTCTTGATGAACCAGTACCAGACCGATCTTGCCTTTGGGTTTGGGTATCTCGATGGTGCACCCATTACCGGTAATAAGATCTTGGAGAGTTTGCATATTTCGACTGATGAAAGTAGGAAGAGGAAAGTTGTGCTTATAATGTTCGGTTGGGCTGTGCTATATAGGATTTTGTTTTACTTGGTCATTCGTTTTGCATCAAAAAACCAGAGGTCGTAG 2121 0.5002 MTQPNGHHRVDQTVIDIKKPPKKKVEGKWSNEEVDLLHDITSYAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGRVSLDGATVSASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGSLSLADKRQRVEKLIDQLGLTTSRNTYIGDEGTRGISGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSANSVIEKVHDIARSGSTVILTIHQPSSRIQLLLDHLIVLARGQLIFQGSPQDVALHLNRMPRKVPKGENPIELLIDVIQEYDQSEVGVEALAEFARTGVKPPPLSDQQHSLSSAPPSHLSHMYEEKSQDFSRSSQVSRRALDDFDHSLRSPYNNTSISWSTGNSAAFLKFTPSRLRNDHKLQNTTRTNASPGYYTYSSEILQATPTPHSSDYTVNENDYLTPSNATQEHLGPKFANSYLAEIWILMRRNFINIRRTPELFLSRLMVLTFMGFMMATMFHTPKQNLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASTYTIAGLITHMPFILLQATAYALIVWFALKLRGPFLYFLLVLFVSLLSTNSFVMFVSSVVPNYILGYAMVIAFTALFFLFCGYFLNSHDIPSYWHWMNKISTMTYPYEGLLMNQYQTDLAFGFGYLDGAPITGNKILESLHISTDESRKRKVVLIMFGWAVLYRILFYLVIRFASKNQRS 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01346 706 ProSitePatterns ABC transporters family signature. 160 174 IPR017871 GO:0005524|GO:0016887
Pumo8g01346 706 MobiDBLite consensus disorder prediction 297 311 - -
Pumo8g01346 706 Gene3D - 23 255 IPR027417 -
Pumo8g01346 706 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 33 693 - -
Pumo8g01346 706 MobiDBLite consensus disorder prediction 293 331 - -
Pumo8g01346 706 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 12 260 IPR003439 GO:0005524
Pumo8g01346 706 SMART AAA_5 46 246 IPR003593 GO:0016887
Pumo8g01346 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 248 IPR027417 -
Pumo8g01346 706 MobiDBLite consensus disorder prediction 316 331 - -
Pumo8g01346 706 FunFam ABC transporter G family member 6 19 258 - -
Pumo8g01346 706 Pfam ABC transporter 37 188 IPR003439 GO:0005524
Pumo8g01346 706 Pfam ABC-2 type transporter 435 641 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01346 Pumo-Chr8 45876268 45880510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01346 30 274 Calmodulin-binding Proteins AT2G36910 27.016 6.76e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01346 K05681 - gmx:100804809 1226.46