Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01338 ATGGCCATATCCGATACTAGGCAAAGGCACATGCCATCTCAGAGAGATAGAGAAACGGGTCAACGCCTGGAGTATCCTGAAGCTATTCGCTTAACCCATCCATCTAACCCACAATTTAAGGGAGAGGTGGATGACAAATACCAATACTCGAGTGAGAACAAAGATAGCTGTGTTCATGGCTGGATTACCCAGGATGATTTAGCACCCGAGGGTTTCTGGATGATAACACCCAGTAATGAGTTCCGCAGTGCTGGGCCCATTAGGCAAGACCTCACCTCTCATGTTGGCCCAACAACTCTTAACATGTTCAAGAGCACTCACTATGGTGGCAAAGACTTAAGCATGACATTTGGTAAAGGAGAGACTTATAAAAAGGTTTTTGGCCCAGTTTTTGTCTACCTTAACTCTGCTCCAAACAAAGTTCAGTTTCGGTCTTTGTGGTCAAATGCTGTAGAACAGTTATCCAATGAAGTCAGAAGATGGCCTTATGATTTCGTTGGATCAAAAGATTTTCTTCCACCTGATCAACGGGGAACAGTGTCAGGACAACTACAAGTCCAAGATGGGGGAGGGACAGCTCAACCTGCTAACAATGCTTATGTTGGACTAGCTTTGCCTGGAGATGTAGGATCATGGCAAAATGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGACAAAGATGGACACTTCTTAATTAAAAATATTGTGCCTGGGGATTACAACTTGTATGCATGGGTTCCTGGCTTTATTGGAGATTATAAATATACAACTAGTATTACCATCAAACCAGGGGACAACATCACCTTGGAATCACTTGAATATAATCCTCCAAGAAATGGTCCTACTCTTTGGGAAATTGGGATCCCTGATCGCTCAGCTGAAGAATTCTTTGTACCAAACCCAAACCCCGGGCTCAGTAACAAACTCTACCGCAACAATGGCCCAGACAAGTTTAGGCAATACGGCTTGTGGGAACGTTACACTGAACTATATCCAATCCATGATCTCATTTACACGGTTGGTGTTTCTGACTATCATATGGATTGGTTTTTCGCTCAGGTTACTAGGGGCACAGTGAATAAGACATACGTTCCAACCACATGGCAGATTCAATTCCAACTTCAAAATATCATAATTGGAGGAAACTACACACTACAACTGGCCTTGGCATCTGCCACTTTTTCTAGATTGGAGGTTAGATTCAATGATCCCAATGTTAAGCTTCCTCACTTCTCAACTGGGCTAATAGGCGATGACAATGCCATAGCAAGGCATGGCATCCATGGATTGTATAGGCTATATACTATAGTTGTAGATGTTGAAAGCTCACTGTACCAGTGTATGGGAACAATGTTCATTGAGTTTAGGAAGATCGCGATGTTTCTTCTTTCTACTCATAGCAAAGTGCATAGAAGACCACATGGTACTATTGTAGTTGTTCGTGTTTTCAGCTTTGATGAGGAGGAGGATCCATCAAAGGCTTCTCGATAG 1494 0.4277 MAISDTRQRHMPSQRDRETGQRLEYPEAIRLTHPSNPQFKGEVDDKYQYSSENKDSCVHGWITQDDLAPEGFWMITPSNEFRSAGPIRQDLTSHVGPTTLNMFKSTHYGGKDLSMTFGKGETYKKVFGPVFVYLNSAPNKVQFRSLWSNAVEQLSNEVRRWPYDFVGSKDFLPPDQRGTVSGQLQVQDGGGTAQPANNAYVGLALPGDVGSWQNESKGYQFWTQTDKDGHFLIKNIVPGDYNLYAWVPGFIGDYKYTTSITIKPGDNITLESLEYNPPRNGPTLWEIGIPDRSAEEFFVPNPNPGLSNKLYRNNGPDKFRQYGLWERYTELYPIHDLIYTVGVSDYHMDWFFAQVTRGTVNKTYVPTTWQIQFQLQNIIIGGNYTLQLALASATFSRLEVRFNDPNVKLPHFSTGLIGDDNAIARHGIHGLYRLYTIVVDVESSLYQCMGTMFIEFRKIAMFLLSTHSKVHRRPHGTIVVVRVFSFDEEEDPSKASR 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01338 497 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 453 - -
Pumo8g01338 497 CDD RGL4_M 176 273 IPR029413 -
Pumo8g01338 497 MobiDBLite consensus disorder prediction 9 23 - -
Pumo8g01338 497 Gene3D - 172 272 - -
Pumo8g01338 497 Pfam Polysaccharide lyase family 4, domain III 283 451 IPR029411 -
Pumo8g01338 497 Pfam Rhamnogalacturonate lyase family 1 43 IPR010325 -
Pumo8g01338 497 Pfam Polysaccharide lyase family 4, domain II 197 270 IPR029413 -
Pumo8g01338 497 Gene3D - 281 460 - -
Pumo8g01338 497 FunFam Rhamnogalacturonate lyase B 173 270 - -
Pumo8g01338 497 Gene3D - 8 140 IPR014718 GO:0030246
Pumo8g01338 497 MobiDBLite consensus disorder prediction 1 23 - -
Pumo8g01338 497 CDD RGL4_C 285 455 - -
Pumo8g01338 497 SUPERFAMILY Starch-binding domain-like 172 271 IPR013784 GO:0030246
Pumo8g01338 497 SUPERFAMILY Galactose-binding domain-like 280 441 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01338 Pumo-Chr8 45655633 45660719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01338 1 454 Polysaccharide Lyase AT1G09890 57.952 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01338 K18195 - gmx:100781089 768.844