Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01337 ATGAAGGTGGCAAGTCTGGTGGTGATTGACAATGGCATCGTTTCCCTCAATTTGTCAAAGCCCGAGGGCTATATCATTGGAATATATACTGGAATTGACAATTTACTTGAGCCTAAAAATAAAGAATACGATAGAGGGTACTTGGACGTTGTTTGGAATGAACCAGGAAAATCTGGCATGTTTGAGAGAATACATGGGACAAATTTCTCAGTCATTGTAGCAAACGAGAATATAGTGGAGGTTTCATTTTCAAGAACATGGACAACTTCCATGAAAGGCTCAAGTGTCCCCATAAACATAGACCAAAGGTATATATTGCGAAAAGGTGATTCTGGGTTTTATTCATACGCAATATTTAATCGACCAGCAGGATTACCTGCAGTGGAGGTTGATCAAATTAGGATTGTTTTCAAACTCGACGGAGCCAGGTTCCACTATATGGCCATATCTGATACTAGGCAAAGGAACATGCCATCTATGGCAGATAGAGTATCAGGTCAATGCCTGGCGTATCCTGAAGCTGTTCTCTTAACCCATCCATCTGAGCAACAATTTACGGGAGAGGTGGATGACAAATACCAATACTCGAGTGAGAACAAAGATAACTCTGTTCATGGGTGGATTACCCAGGATGATTCAGCACCCGTGGGTTTCTGGTTGGTAACACCTAGTAATGAGTTCCGCCATGCTGGGCCCATTAAGCAAGACCTCACCTCTCATGTTGGCCCAATTACTCTTTCTATGTTTGTGAGCACTCATTATGCTGGCAAGGAGGTAACCATGGCATTTAATGAAGGGGAGACATATAAAAAGGTTTTTGGCCCAGTTTTTGTCTACCTTAACTCTGCTCCAAACAAATCTCAGTTTCGGTCTCTGTGGTCAGATGCTGTAGAACAGTTATCCAATGAAGTTAGAAGATGGCCTTATGATTTTGTTGGATCAAAAGATTTCCTTCCACCCAATCAACGGGGAACAGTGGCAGGACAACTACTAGTCCAAGATGGGGACCAGAGAGCTCAACCTGCTAGCAATGCTTACGTTGGTCTAGCTTTGCCTGGAGTCGCAGGATCATGGCAGAAAGAAAGCAAGGGTTATCAATTCTGGATTCAAGCTGGCAAAGATGGACACTTCCTAATTAACAACATTGTACCTGGGGATTACAACTTGTATGCATGGGTTCCTGGTTTTATTGGAGATTATAGATATACAACTAAAATTACCATCAAACCAGGGGGCAACATCAACTTGGATTCACTTATTTATAATCCTCCAAGAAATGGTCCTACTCTATGGGAAATTGGGATCCCAGATCGCTCAGCTGCAGAATACTATATACCAGACCCTAACCCCAAGTTCATGAACAGATTATTCAAGCACGATAGCCAAGACAAGTTTAGGCAATACGGCTTATGGGAACGTTACACTGAGTTATATCCAAACGATGATCTCGTTTACACTGTTGGTGCTGCTGACTATCACAATGATTGGTTTTATGCTCAAGTTACCAGGAGCACAGCAGAAAAGACATTCGTGCCAACCACATGGCAAATTCAATTCCAACTTAAAAATATCATAATGCCAGGAAATTACACATTACAAGTGGCCTTGGTATCCGCCACTAATGCTAGATTGGAGGTAAGGTTCAATGACCCGAATGCTAAGCTTCCCCTCTTCTCAACAGGGCTAATAGGCGATGACAATGCCATAGCAAGACATGGCATCCATGGATTGTATAGGTTGTATACTGTAGCCATAGGAAGCAATCATTTGGTAAAAGGAAAGAACATCATCTATTTGACACAGTCAAAAGGCATAGGTCCTTTCATGGGAGTTATGTATGATTATGTCCGCTTAGAAAGTCCTCCAATTAAAAATACTTGA 1881 0.4195 MKVASLVVIDNGIVSLNLSKPEGYIIGIYTGIDNLLEPKNKEYDRGYLDVVWNEPGKSGMFERIHGTNFSVIVANENIVEVSFSRTWTTSMKGSSVPINIDQRYILRKGDSGFYSYAIFNRPAGLPAVEVDQIRIVFKLDGARFHYMAISDTRQRNMPSMADRVSGQCLAYPEAVLLTHPSEQQFTGEVDDKYQYSSENKDNSVHGWITQDDSAPVGFWLVTPSNEFRHAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFNEGETYKKVFGPVFVYLNSAPNKSQFRSLWSDAVEQLSNEVRRWPYDFVGSKDFLPPNQRGTVAGQLLVQDGDQRAQPASNAYVGLALPGVAGSWQKESKGYQFWIQAGKDGHFLINNIVPGDYNLYAWVPGFIGDYRYTTKITIKPGGNINLDSLIYNPPRNGPTLWEIGIPDRSAAEYYIPDPNPKFMNRLFKHDSQDKFRQYGLWERYTELYPNDDLVYTVGAADYHNDWFYAQVTRSTAEKTFVPTTWQIQFQLKNIIMPGNYTLQVALVSATNARLEVRFNDPNAKLPLFSTGLIGDDNAIARHGIHGLYRLYTVAIGSNHLVKGKNIIYLTQSKGIGPFMGVMYDYVRLESPPIKNT 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01337 626 CDD RGL4_N 7 288 - -
Pumo8g01337 626 SUPERFAMILY Galactose-binding domain-like 426 619 IPR008979 -
Pumo8g01337 626 Gene3D - 318 418 - -
Pumo8g01337 626 Gene3D - 427 619 - -
Pumo8g01337 626 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 5 622 - -
Pumo8g01337 626 CDD RGL4_C 431 619 - -
Pumo8g01337 626 SUPERFAMILY Galactose mutarotase-like 85 284 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pumo8g01337 626 SUPERFAMILY Starch-binding domain-like 318 418 IPR013784 GO:0030246
Pumo8g01337 626 Pfam Polysaccharide lyase family 4, domain III 429 618 IPR029411 -
Pumo8g01337 626 CDD RGL4_M 322 419 IPR029413 -
Pumo8g01337 626 Pfam Rhamnogalacturonate lyase family 6 189 IPR010325 -
Pumo8g01337 626 Gene3D - 54 298 IPR014718 GO:0030246
Pumo8g01337 626 Pfam Polysaccharide lyase family 4, domain II 343 415 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01337 Pumo-Chr8 45630014 45637210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01337 7 621 Polysaccharide Lyase AT1G09890 56.039 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01337 K18195 - gmx:100781089 1155.2