Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01330 ATGCAGAACGTGTTAGCAGGAGAAGAAAACGAAAAAGTTGCTACCTATGGGTGGGCAGCTAGAGACGCATCAGGAATTCTCTCTCCATTCCACTTTACCAGAAGGGCAAATGGTGATAATGATATCACACTTGACATACTCTATTCTGGGATTTGCCATACGGATCTCCACATGGTGAAGAACGACTTTGGAATGTCCATCTATCCAATGGTTCCGGGGCATGAGATTGTGGGTAAAGTGACAAAGGTGGGTAGCAGAGTCACAAAATTCAGTATTGGTGACATAGCTGGTGTACATGGCCTTGTGGGTTCGTGTGGTTCATGTTCCGACTGCAGCAAGGGCTTCTATGTATATTGTCCAAAAATGATTTTAACCTACAGTGCACACTACCATGATGGAACAATAACTCAAGGTGGATACTCAAATAACATAGTGGTTGATCAGAACTTTGCGGTGCTAATCCCAAAATCTCTTCCACTAGATGGTGCAGCCCCGCTGCTATGTGCTGGAATCACAGTATACAGCCCAATGAAGTATTATGGGCTTGCTCAGCCTGGATTGCACTTGGGTGTGGTGGGCCTGGGTGGCCTAGGGCATATGGCTGTCAAGTTTGCTAAGGCTTTTGATATGCATGTCACTGTGATAAGTACATCTCCCAACAAGAAGAAGGAAGCATTGGAAAGGCTTGGTGCCGATGCATTCTTGTTTAGTCAAGACCAACAACAGTTGCAGGATGCCATGGGCACAATGGATGCCATTATTGACACAGTTTCAGCGAAGCACTCTATCCAATCACTAATTGATTTATTGAAAACAAGTGGAAAGTTGATTTTGGTGGGTGCAACAGCCTTACCTCTTGAGTTATTAACTATACCATTGATTTCGGGCAGAAAGATGATTGCTGGTAGTGCAGGAGGGGGGCAAGAAGAGATGCAAGAGATGATGGATTTTGCAGCAAAGCATAATATTAAGGCAGATGTGGAAGTCATTCCAATGAACTATGTGAACATTGCCCTTGAGAGACTGAAAAATAATGATGTTAAGTATCGCTTTGTCATTGATGTGGCAAATACGATAAGCTAG 1083 0.4377 MQNVLAGEENEKVATYGWAARDASGILSPFHFTRRANGDNDITLDILYSGICHTDLHMVKNDFGMSIYPMVPGHEIVGKVTKVGSRVTKFSIGDIAGVHGLVGSCGSCSDCSKGFYVYCPKMILTYSAHYHDGTITQGGYSNNIVVDQNFAVLIPKSLPLDGAAPLLCAGITVYSPMKYYGLAQPGLHLGVVGLGGLGHMAVKFAKAFDMHVTVISTSPNKKKEALERLGADAFLFSQDQQQLQDAMGTMDAIIDTVSAKHSIQSLIDLLKTSGKLILVGATALPLELLTIPLISGRKMIAGSAGGGQEEMQEMMDFAAKHNIKADVEVIPMNYVNIALERLKNNDVKYRFVIDVANTIS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01330 360 Pfam Zinc-binding dehydrogenase 196 319 IPR013149 -
Pumo8g01330 360 FunFam probable cinnamyl alcohol dehydrogenase 18 177 - -
Pumo8g01330 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 324 IPR036291 -
Pumo8g01330 360 Gene3D - 169 325 - -
Pumo8g01330 360 FunFam Cinnamyl alcohol dehydrogenase 169 325 - -
Pumo8g01330 360 CDD CAD1 17 354 IPR047109 GO:0016616
Pumo8g01330 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Pumo8g01330 360 FunFam Putative cinnamyl alcohol dehydrogenase 6 326 355 - -
Pumo8g01330 360 Pfam Alcohol dehydrogenase GroES-like domain 40 152 IPR013154 -
Pumo8g01330 360 Gene3D - 18 355 - -
Pumo8g01330 360 PANTHER ALDEHYDE REDUCTASE 10 358 IPR047109 GO:0016616
Pumo8g01330 360 SMART PKS_ER_names_mod 25 353 IPR020843 GO:0016491
Pumo8g01330 360 SUPERFAMILY GroES-like 22 186 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01330 Pumo-Chr8 45472974 45476028 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01330 16 359 Monolignol Biosynthesis Gene Families AT4G37990 63.081 5.12e-149 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01330 K23232 - gmx:100801089 607.831