Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01310 ATGAAAGGTCTTAAGAGTGCGGAGAAGAGGGGAAAAATAGAAGAGAACGAAAACCCAGAAATGACATCGACGAAAAATCACGTGAAAGAGTTTCCCAGCGACGGTGAATCATCGCCGAGGGCGATTCTGGAAACCCCTGTTTCGGAGACAGAGTCCGACAACAGTGGAAGCAGCGAAAACTTCGGCTCCATCTCGCCGGAGAAGTCGCCGGCGGTGACCGGAAAAGAGGATTCCAAGGATGGTTACGTGCAGCAGTGGAAGTCCATGATCGACTTAACGGCCATTCCCCTGCTTGCGGTGGGCCATGATATCTCTCGAAAGGGTTTGACCAAAAAACTGGCTCGTATTCGAAGTGCTGAAGATAGTATTGATATTGGAGCTATTCCCACGAAACCCTCTTGGAGGAACTTCGATTATGAAGAGTTAGTTGCTGCTACTAATGATTTTAGTTCTGAGAACTTGATAGGAAAAGGTGGTCATGCTGAAGTGTACAAAGGCTACTTACCCGATGGTCAAGTTATAGCAGTAAAGAGGCTAATGAAGAATGAAAAGGATGCTGCAGACAGAGCTGGTGATTTCTTGACAGAGCTTGGGATTATTGCACACATAAACCACCCAAATGCAACACGCCTTATTGGGTTTGGTGTTGATCGTGGCCTCTACTTTGTCCTACAACTTGCTGAACATGGCAGTCTTTCTTCTATGCTTTTTGGTTCTGAAGGCTTGGACTGGAAGAGAAGATTCAAGGTAGCTGTTGGGGTGGCAGACGGATTGCATTATCTCCATAAAGAGTGCCCAAGACGAATCATTCATAGGGACATCAAGGCCTCCAACATATTACTAGATGAAAACGATGAAGCTGAGATTTCAGATTTTGGACTGGCAAAGTGGCTCCCAAGTAAGTGGACCAACCACGTTGTCTTCCCAATAGAAGGAACATTTGGATATTTGGCTCCAGAGTACTTTATGCATGGAATTGTGGATGAGAAAACTGATGTGTTTGCGTTTGGAGTTTTGCTATTGGAGCTCATCACAGGTCGCCGCGCCGTTGATTCGGATAGTAGACAAAGTCTTGTTATCTGGGCCAAGCCACTGCTGGATACAAACAATGTAAAGGAGTTAGCAGACACCAGGTTAGGAGAGGAATATGATCCTATTGAAATGAAGCGTGCCATGGCGGCAGCTTCCATGTGTGTCCACCATGCAGCCTCCAAGCGGCCATACATGAATCAGGTTGTGCAGGTGCTAAAGGGTGAAGAGACAGTTATAGAACCAAAGAAAAATTTAGTTGCACAAAAGTCTCTCATGTTAGAGGCATGTGACCTAGAAGATTATACTTGCTCAAGTTACTTGAAGGACCTCAATCGCCACAGGCAACTAATCATGGAGTAA 1392 0.4569 MKGLKSAEKRGKIEENENPEMTSTKNHVKEFPSDGESSPRAILETPVSETESDNSGSSENFGSISPEKSPAVTGKEDSKDGYVQQWKSMIDLTAIPLLAVGHDISRKGLTKKLARIRSAEDSIDIGAIPTKPSWRNFDYEELVAATNDFSSENLIGKGGHAEVYKGYLPDGQVIAVKRLMKNEKDAADRAGDFLTELGIIAHINHPNATRLIGFGVDRGLYFVLQLAEHGSLSSMLFGSEGLDWKRRFKVAVGVADGLHYLHKECPRRIIHRDIKASNILLDENDEAEISDFGLAKWLPSKWTNHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSDSRQSLVIWAKPLLDTNNVKELADTRLGEEYDPIEMKRAMAAASMCVHHAASKRPYMNQVVQVLKGEETVIEPKKNLVAQKSLMLEACDLEDYTCSSYLKDLNRHRQLIME 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01310 463 Gene3D Transferase(Phosphotransferase) domain 1 228 435 - -
Pumo8g01310 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Pumo8g01310 463 MobiDBLite consensus disorder prediction 43 67 - -
Pumo8g01310 463 MobiDBLite consensus disorder prediction 1 78 - -
Pumo8g01310 463 SMART serkin_6 149 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01310 463 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 124 226 - -
Pumo8g01310 463 Gene3D Phosphorylase Kinase; domain 1 111 223 - -
Pumo8g01310 463 ProSiteProfiles Protein kinase domain profile. 149 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01310 463 Pfam Protein kinase domain 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01310 463 MobiDBLite consensus disorder prediction 1 34 - -
Pumo8g01310 463 SUPERFAMILY Protein kinase-like (PK-like) 132 421 IPR011009 -
Pumo8g01310 463 ProSitePatterns Protein kinases ATP-binding region signature. 155 177 IPR017441 GO:0005524
Pumo8g01310 463 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 228 430 - -
Pumo8g01310 463 PANTHER OS08G0249100 PROTEIN 16 435 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01310 Pumo-Chr8 45238590 45243463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01310 137 412 Trihelix Transcription Factor Family AT1G68690 48.252 1.70e-72 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo8g01310 Pkinase 5.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01310 - - gmx:100818314 790.801