Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01306 ATGAGTGCTGCGGAAAAAATTGAGATCCTGAAAAATAAGCTGAATGAAGCTCAGAAGATCATCCAATTGAAGAGGAAAGAAGCCAAGGATAATATAGAGAGGCACGCAAAAGCTGAATGGGCAATTTGTTTATGCACCAGTCGGGCTGAAGAACTGGAAAGTGGAATACGGGAGGAGGTGAGCGCAAGAGAAGAGCTAAAGAAGGAATCAGATGCAGAGAAGGAGCAAACAGAGGAGATGAGAACGGAGGTGGAAGAGAGGAAGAGGAGGCTGAGTTCTCTAATGGAAGTCCAATCGGAGCTCTCAAATAGGCTCCAGATATGGACGGCGTCGAAGGCGCGGGCGGAGACGCAGCTGGAGAAGGCGGTGGGAGAGAGGAGAGAGATGGTGAGGGAGATAGAGGAGCTGCGGCGGCAGAGGGACGTGCTCAACAGAAGGATCGATTTCTGCAAGCAGAAGGACGCCATCGGAATGGCCGCGAGGCTTGCCGAGACCTGCTGCGCCTTCAGGGAGTACACGGAGGAGGAGCTCCGGTTGGCGACCGATAACTTCTCCGAGCGCCTCAGGTTGAAGTCCGGCGGGGATTGGACCAATGTCTACAGAGGACGCTTTAACCATTCCACTGTTGCGATCAAGATGCTGCCTTCTTTCTCACACCAACATTTCCAATCCAAGGTGAGGCTTCTTGGTGATATTCGGCAACCTCATCTAGTTGCCATGGTGGGCTTTTGCTCGGAGCCCAAATGCATAGTTTTGGAATACATGCGCAATGGAAGCTTACAAGACATGCTGTTTTCTAGGAGAAGAAACCGGGCCTTACGATGGCACGACCGAATACGAATAGCCACAGAAGTGTGTTCGGGCCTGGGCTTTCTCAATGCAGCTGAGCCGAGGCCCGCTATTCATTGTCATTTTACCCCATCCAAAGTCCTCCTAGACCGCAATTTGGTTGCAAAGATCACGGGCTTTGGGCTTCACGAATGCCACGACGAACAGTGTAACGTTGAGTCAGATTTGCGGGCCATAGGGGTTTTGTTAATGCATCTTTTGACCGGAAGAAATTGGGCTGGGCTCATTGAAGAGGTGATGACGGTGGATATGGATAAAGAGGCTTTGGGTAGCGTTCTTGATGAGATGGCTGGACAATGGCCATTGGATCTAGCAAGGGAACTTGCGGCCCTGGCTATGAGGTGCATGTCCATCAAAAGCGAGCCCAACTCAGAACTGAGCATTGCAAGGGTCCTAGAGGAACTCAATGAGATAAGAAGAAAGGGGGATGAAATAGTTCGAAAGGAAGGGCGAAAGGTAATCATTGGTGGATGTGTAGATAGAGAGGGCTCCAGTGATGTGCCTAGTGTTTTCCTTTGCCCCATACTTCAGGAGGTAATGAAAAACCCACACGTGGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAGCACTGGTTGCAGTCGGGGCATGACACATCACCAATGACAAATTTGAGGCTGAAGCACACATTCCTCACTCCGAATCACACTCTTCGTTCACTAATTGAAGATTGGCAGACCAACAAATCACCTAGAGTTACACATTAA 1581 0.4991 MSAAEKIEILKNKLNEAQKIIQLKRKEAKDNIERHAKAEWAICLCTSRAEELESGIREEVSAREELKKESDAEKEQTEEMRTEVEERKRRLSSLMEVQSELSNRLQIWTASKARAETQLEKAVGERREMVREIEELRRQRDVLNRRIDFCKQKDAIGMAARLAETCCAFREYTEEELRLATDNFSERLRLKSGGDWTNVYRGRFNHSTVAIKMLPSFSHQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMRNGSLQDMLFSRRRNRALRWHDRIRIATEVCSGLGFLNAAEPRPAIHCHFTPSKVLLDRNLVAKITGFGLHECHDEQCNVESDLRAIGVLLMHLLTGRNWAGLIEEVMTVDMDKEALGSVLDEMAGQWPLDLARELAALAMRCMSIKSEPNSELSIARVLEELNEIRRKGDEIVRKEGRKVIIGGCVDREGSSDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEHWLQSGHDTSPMTNLRLKHTFLTPNHTLRSLIEDWQTNKSPRVTH 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01306 526 SMART Ubox_2 453 516 IPR003613 GO:0004842|GO:0016567
Pumo8g01306 526 Coils Coil 7 31 - -
Pumo8g01306 526 ProSiteProfiles Protein kinase domain profile. 185 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01306 526 MobiDBLite consensus disorder prediction 63 87 - -
Pumo8g01306 526 PANTHER OS02G0152300 PROTEIN 33 514 - -
Pumo8g01306 526 Coils Coil 49 94 - -
Pumo8g01306 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 448 525 IPR013083 -
Pumo8g01306 526 Pfam Protein tyrosine and serine/threonine kinase 194 332 IPR001245 GO:0004672|GO:0006468
Pumo8g01306 526 ProSiteProfiles U-box domain profile. 449 523 IPR003613 GO:0004842|GO:0016567
Pumo8g01306 526 Gene3D Phosphorylase Kinase; domain 1 158 254 - -
Pumo8g01306 526 CDD RING-Ubox_WDSUB1-like 451 506 - -
Pumo8g01306 526 Gene3D Transferase(Phosphotransferase) domain 1 255 426 - -
Pumo8g01306 526 Pfam U-box domain 450 520 IPR003613 GO:0004842|GO:0016567
Pumo8g01306 526 SUPERFAMILY RING/U-box 447 519 - -
Pumo8g01306 526 SUPERFAMILY Protein kinase-like (PK-like) 169 401 IPR011009 -
Pumo8g01306 526 Coils Coil 112 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01306 Pumo-Chr8 45204268 45209195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01306 1 525 U-box Gene Family AT5G65500 52.731 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pumo8g01306 PK_Tyr_Ser-Thr 3.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01306 - - gmx:100786771 940.643