Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01287 ATGGTTTTCCTTCGACAAGGCATGCAACATGTTCGAAATTACTATAACTCAGAAGCTCAAATGATAAGAGGTAGCTTTCATCAGCCATTCATCTCTAGGACATACAAAACCAGTTTCTTGAAGCCAAGATCAAAGGCAGATATCAAATTATTGGCCGCTAAGAAACACAGTGAAGCAGAGAAGAGAGTCAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAAATATCCTCCCAAACTTGATCAAAAAAAAGGTGTCAAAACTGGAAGAACATAGTTCTAAAAACCCATCAAAGGATGCTGTTAAGTTTCCTAATGGGGCAGACAAGTTGAATTTGGAAAGATGTAACAACGAGGAGGGCTTAGTGAAGGCCACAATGAGTTGTGAGGATAGTCCAGGATTGATGTCATCAATATCAAGGGCATTAGGGTCAGTGAAAACTGAAAACCAAAGTGGTAAAGGCTGA 477 0.3983 MVFLRQGMQHVRNYYNSEAQMIRGSFHQPFISRTYKTSFLKPRSKADIKLLAAKKHSEAEKRVKRRRMRINGQYETLRNILPNLIKKKVSKLEEHSSKNPSKDAVKFPNGADKLNLERCNNEEGLVKATMSCEDSPGLMSSISRALGSVKTENQSGKG 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01287 158 Gene3D - 51 123 IPR036638 GO:0046983
Pumo8g01287 158 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 93 IPR036638 GO:0046983
Pumo8g01287 158 MobiDBLite consensus disorder prediction 91 111 - -
Pumo8g01287 158 PANTHER TRANSCRIPTION FACTOR BHLH30 15 151 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01287 Pumo-Chr8 44993581 44994405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01287 40 150 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 33.065 4.99e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g01287 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01287 - - gmx:102667782 239.58