Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo8g01279 | ATGGCTCACAACTCAGACAGTGCCACCTCCAACCTTCTCTGTTCGGAGAACAGCAGCACCTGCTTCGATGATGATTTGGAATGTGATGCCGCAGATGGGTCTAGAATCTCGCATTTATGGGACCACGGGAACGGTTACTCTGAACACGAGGGTGGTGGATCGGAGTTATTGGCGTGTTTTGTGGCGCAGAGTGAGGAAACTGTGAGGGCTATGGTGGAGAGAGAGAAGGAGCATTTGCCGAGGGATGATTACTTGATGAGGCTGAGGAGTGGGGAGTTGGACTTGGGGGTTAGGAGGGAGGCCCTTGATTGGATTTGGAAGGCTCATGCTTATTTTGGCTTTGGACCCTTGAGTTTTTGTTTGGCTGTGAACTACTTGGATCGCTTCCTATCGGTTTTTGACTTACCGAGAGGTTTGAGTTGGACTGTGCAAATTTTAGCTGTAGCTTGCTTGTCAATTGGGGCCAAAATGGAGGAGATCAAAGTGCCTCATTCTGTAGATTTACAGGTTGGGGAACAAAAGTTTGTGTTTGATGCTAGTACCATTCAAAAAATGGAACTACTGGTATTAAGCACATTGAGCTGGAAAATGCGCGCTTTAACTCCTTGTTCCTTCATAGACTACTTCCTTGGCAAGATCACTTGTGAGCAGCATCCAGCAAAATCATCCATTTCAACATCATTGCAGCTCATCCTTAGCATAATCAGAGGTATCGACTTCTTGGAATTCCGGCCTTCTGAAATTGCTGCCGCAGTGGCAGTTTCTGTTTTAAGGGAATCGCAAGCAAAAGAGATTGATAAGGCCATAACTGATCTCTTAATAGTAGACAAGGGGAGAGTTCTAAAGTGTGTTGAATTGATAAGAGATTTGTCCATGATCAATGTTGCTGCTAGTTTAGGCAGCAAGGTGCCATATGTGCCCCAAAGCCCTATTGGGGTGCTGGATGCTGGGTGCTTAAGTTATAAGAGTGATGAATTAACAGTTGGTTCATGTCCAATTTCTTCACATAATAGTTCAAATCCAAACACTACTAAGAGGAGCAAACCAGATGGACCTTCTAATGGAACCTCCAAGTCATGA | 1080 | 0.4509 | MAHNSDSATSNLLCSENSSTCFDDDLECDAADGSRISHLWDHGNGYSEHEGGGSELLACFVAQSEETVRAMVEREKEHLPRDDYLMRLRSGELDLGVRREALDWIWKAHAYFGFGPLSFCLAVNYLDRFLSVFDLPRGLSWTVQILAVACLSIGAKMEEIKVPHSVDLQVGEQKFVFDASTIQKMELLVLSTLSWKMRALTPCSFIDYFLGKITCEQHPAKSSISTSLQLILSIIRGIDFLEFRPSEIAAAVAVSVLRESQAKEIDKAITDLLIVDKGRVLKCVELIRDLSMINVAASLGSKVPYVPQSPIGVLDAGCLSYKSDELTVGSCPISSHNSSNPNTTKRSKPDGPSNGTSKS | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo8g01279 | 359 | FunFam | D2/4-type cyclin | 81 | 193 | - | - | |
| Pumo8g01279 | 359 | CDD | CYCLIN_AtCycD-like_rpt1 | 97 | 195 | - | - | |
| Pumo8g01279 | 359 | Gene3D | - | 81 | 198 | - | - | |
| Pumo8g01279 | 359 | MobiDBLite | consensus disorder prediction | 332 | 359 | - | - | |
| Pumo8g01279 | 359 | SUPERFAMILY | Cyclin-like | 60 | 197 | IPR036915 | - | |
| Pumo8g01279 | 359 | FunFam | D6-type cyclin | 194 | 285 | - | - | |
| Pumo8g01279 | 359 | SMART | cyclin_7 | 103 | 191 | IPR013763 | - | |
| Pumo8g01279 | 359 | ProSitePatterns | Cyclins signature. | 98 | 129 | IPR006671 | - | |
| Pumo8g01279 | 359 | PANTHER | CYCLINS | 50 | 288 | IPR039361 | - | |
| Pumo8g01279 | 359 | CDD | CYCLIN_AtCycD-like_rpt2 | 201 | 287 | - | - | |
| Pumo8g01279 | 359 | Pfam | Cyclin, N-terminal domain | 68 | 197 | IPR006671 | - | |
| Pumo8g01279 | 359 | Pfam | Cyclin, C-terminal domain | 201 | 291 | IPR004367 | - | |
| Pumo8g01279 | 359 | Gene3D | - | 70 | 286 | - | - | |
| Pumo8g01279 | 359 | SMART | Cyclin_C_2 | 200 | 334 | IPR004367 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo8g01279 | Pumo-Chr8 | 44835100 | 44837769 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo8g01279 | 62 | 268 | Core Cell Cycle Gene Families | AT5G65420 | 61.244 | 3.35e-89 | 267 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo8g01279 | K18810 | - | gmx:100794010 | 607.06 |