Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01276 ATGGAATTCGAGGATCAAGAGGAGCAGGAGGAGGAGCTGTGTATGGGTGGTGGTGGAGGAGTGGCTTACGACCCGACCCGGATGAAGATTCCGGTGGCGGCGGAGCCGGTGAGGAGCAGCAGCAGCAACGGCGGCGGAGGCGCCAAGGCGAGGTATAGGGAGTGTTTGAAGAACCACGCCGTCGGAATTGGAGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGGCGGCGGGGACGGAGGGCACGCTGGACTCGCTAAAATGCGCCGCGTGCAGCTGCCACCGGAGCTTCCACCGCAAGGAGACCGATTCCTCCGCCGTGGTCGCTGTCGCCGGCGACCCGTACTTTCTACACCACCACCACCCTCCGCCGCAGTTCGCGGCGTACTACCGGCATCCTGCGGGGTACCTGCACGTGGGGGGGCAGCAGCGGGCGGCGGCGGGGACGCTGGCGCTGCCGTCGACGTCCGGCGGCGGCGGAACGCAGAGCACTCGGGAGGACCAGGAAGACGTTTCGAACCCGAGTGCAGGAGGAACAGGGTCCAAGAAACGTTTCAGAACCAAGTTCACGCAGGAGCAAAAGGACAAAATGCTCGAACTTGCTGAAAAACTAGGGTGGAGGATTCAGAAACACGACGAGGCTGTGGTCCAAGCTTTCTGCAACGAAACCGGTGTCAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTCGGTAAGAAGCCCTAG 738 0.6233 MEFEDQEEQEEELCMGGGGGVAYDPTRMKIPVAAEPVRSSSSNGGGGAKARYRECLKNHAVGIGGHALDGCGEFMAAGTEGTLDSLKCAACSCHRSFHRKETDSSAVVAVAGDPYFLHHHHPPPQFAAYYRHPAGYLHVGGQQRAAAGTLALPSTSGGGGTQSTREDQEDVSNPSAGGTGSKKRFRTKFTQEQKDKMLELAEKLGWRIQKHDEAVVQAFCNETGVKRHVLKVWMHNNKHTLGKKP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01276 245 MobiDBLite consensus disorder prediction 150 180 - -
Pumo8g01276 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 52 101 IPR006456 -
Pumo8g01276 245 FunFam Zinc-finger homeodomain protein 2 168 243 - -
Pumo8g01276 245 SUPERFAMILY Homeodomain-like 170 243 IPR009057 -
Pumo8g01276 245 MobiDBLite consensus disorder prediction 1 20 - -
Pumo8g01276 245 Gene3D - 166 243 - -
Pumo8g01276 245 MobiDBLite consensus disorder prediction 150 187 - -
Pumo8g01276 245 Pfam ZF-HD protein dimerisation region 50 102 IPR006456 -
Pumo8g01276 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 241 - -
Pumo8g01276 245 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 51 101 IPR006456 -
Pumo8g01276 245 NCBIfam homeobox domain, ZF-HD class 182 238 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01276 Pumo-Chr8 44802504 44803620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01276 1 241 ZF-HD Transcription Factor Family AT4G24660 50.622 9.41e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo8g01276 ZF-HD_dimer 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01276 - - gmx:100808910 411.379