Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01267 ATGGAAGAAGCAATGAGGCGTCTCAACGGGGTGGCTCCGATTATTGGATCCGACCCGAAAGGAGACGGAGTTGTAGCCGATAACCCAAAGCGGTCCTCCGCCGTGAACAAGAGGGCCTTAAGAGAAGACGGCGGCGGCGGCGGTGGAGCGATGAGGTACCGCGGCGTGAGGCGCAGGCCGTGGGGGCGTTACGCGGCGGAGATAAGGGACCCTCAGTCGAAGGAGCGGCGGTGGCTGGGAACCTTCGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGCGGCCTCAAGGCTCGCACCAACTTCGTTTACCCAACTTCTCCGCAACCCTCTTCCGCCACCGCCGAACACTTTTTCCCTAACTTCAACAACTTCCCCAAACACTCTCAACAATCGCCCTTCAGTAATAATCACCGTAACCGCCACCACTTAACCGGTTCCGCCACCTGCTTTGACCACCCTCACGGCGTTGACTTTTCAGCGCCGCGAAACCCTTCTTCCTCTCTCAACATGCTTCTCTTTCGTGACCTCATTAACTCTTCTTCTAACCCTTCTTTGCTTTCTTCTTCCACTCATAACTTCCATGACCAGTTTTACAACAAGGGTGCTTGTGCTTCTACTTTTTCATCGTTACCTAGTGTTCCTTCTTCTTCTTCTCTCGCTCCTTGTTATTCGGTGAATAATTCTCTTGGAGGCTCTTCGTCTGTGAAGATGAACACTTTTTGTGGAACTAATTTTGCTGAAAAGGGTTACGATGATGGTGATGGCTCTGGTTTTTTCTCTCGGGAGTCTTCGGATTCGGGGTTGTTGGAAGAGATAGTTAACAAGTTCTTACCCAAAACGAAGCCTAATAAATGCGAGACTCTGCCAAAAATGGAGTCTTTTCGCAACCCTCAGGAGGAGTCACTTCTTCCCTCGCTCGTTTCTGAATCAACGCTCGTTTCCACCGCGCAATGCTATGATGGCACGAAGAAGGGTTTTCAGAAGACTGAGACTTTTGGTGTTTCTTTTGATCATCAAGGTTTTCCCATGCAGCAATTTGACACCTTTAATGGGTTTAATAGCGTGCAGGCTATGGCTTTGGGGAATGAACAAATCATGATGAATCATGCGGAGAACTGTGTCGTTGAAGATGTTGTTCAGTACCAAGAGCTTCTTAATGCTTTTGCAATAAGGATGCAAAATGCTTAG 1209 0.5029 MEEAMRRLNGVAPIIGSDPKGDGVVADNPKRSSAVNKRALREDGGGGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQPSSATAEHFFPNFNNFPKHSQQSPFSNNHRNRHHLTGSATCFDHPHGVDFSAPRNPSSSLNMLLFRDLINSSSNPSLLSSSTHNFHDQFYNKGACASTFSSLPSVPSSSSLAPCYSVNNSLGGSSSVKMNTFCGTNFAEKGYDDGDGSGFFSRESSDSGLLEEIVNKFLPKTKPNKCETLPKMESFRNPQEESLLPSLVSESTLVSTAQCYDGTKKGFQKTETFGVSFDHQGFPMQQFDTFNGFNSVQAMALGNEQIMMNHAENCVVEDVVQYQELLNAFAIRMQNA 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01267 402 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 34 222 - -
Pumo8g01267 402 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Pumo8g01267 402 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Pumo8g01267 402 MobiDBLite consensus disorder prediction 8 53 - -
Pumo8g01267 402 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Pumo8g01267 402 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Pumo8g01267 402 Gene3D AP2/ERF domain 51 110 IPR036955 GO:0003700|GO:0006355
Pumo8g01267 402 SUPERFAMILY DNA-binding domain 52 109 IPR016177 GO:0003677
Pumo8g01267 402 CDD AP2 52 108 IPR001471 GO:0003700|GO:0006355
Pumo8g01267 402 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Pumo8g01267 402 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01267 Pumo-Chr8 44548484 44549692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01267 51 313 AP2-EREBP Transcription Factor Family AT1G24590 38.603 8.63e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo8g01267 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01267 - - gmx:102669715 558.91