Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01248 ATGGCTTCTCTAACTCCACTTCTTTCTCTTCTCCTCACTCTTCTTGCAACATCTTGTGTAAGTGTAACTGTGTTTTCCTTAGAAGTTTCAATCAAAACATCTTACTTGGAACCTTTTAAATGCTCCCCTAAGATCAGCACATGCAATGCCTCACTCTACCACATAAGCTACAATGACAACATAGATGACATAGCAACCTATTACTCCGTTAACACCTCCCAAATCAAACCTATCATCCGTGGCATCAACCAAGATTACCTTATAACAGTGCCTTGCTCTTGCAACAACACCAATGGCCTTGGCGGTTATTTCTATGATACAACCTACAAGGTGAAGTCCAATGACGCGTTTGTGAAGATTAGCAACTTTGTTTACAGTGGCCAAGCCTGGCCTATTAACAGAGAATTGAATTTGGACCTTGATGACGAGTTAACAATACATCTTCCTTGTGGGTGTTCAGAGAAAAGTGACTCACAAATTGTTGTCACGTACACAGTTCAGCGCAATGATACACCTGCATCAATTGCTGCTCTGCTAAATGCTACGTTAGATGGCATGGTGAGTATGAACGAAGTTCTGGCTCAGAACCCCTCATTCATAGATGTTACTTGGGTGCTATATGTTCCCAGGGAATTGAATGGGTTACCACTTTCCAAAAGAAAAGACAAGAAAAACAAGTTGGAGATAATCACTGGCATCTTAGCGGGTGTGACATTACTTTCAATTATTACCTTGATCATTGTCATTGTCGTTCTTAGGAGATCCAGAGCCAATGAAACTGCCAAAAATGATCTAAGTGCTGTCTCTAAAAGATCAATTACCAATAGAACTATTTCCATAAAGAACCGAGACTTTCATACAGAATATATTGAAGATGCAACAACATTTGAGTCAGAAAGACCAGTAATTTATGCTCTAGAGGAGATTGAAGATGCTACAAATAACTTTGATGAAACCCGAAGGATTGGAGTAGGTGGATACGGTAGTGTGTATTTTGGAATGTTAGAAGAGAAGGAGGTTGCTGTGAAGAAGATGAGGTCTAATAAATCCAAAGAATTCTATGCAGAACTCAAGGCCTTGTGTAAGATCCATCATATCAACATTGTGGAGTTGTTGGGATATGCTAGTGGAGATGACCACCTTTATTTGGTGTATGAGTATGTGCCAAATGGATCTCTCAGTGAACATCTTCATGATCCATTACTGAAAGGTCACCAGCCTCTTTCTTGGTGTGCTAGGATTCAAATTGCACTGGATGCGGCAAAAGGTCTTGAATACATACATGATTACACAAAAGCACGATATGTGCACCGTGATATAAAGACTAGTAATATTCTTCTTGATGAGAAGCTCAGAGCAAAGGTAGCAGATTTCGGACTTGCAAAGCTAGTAGAACGAACCAATGATGAAGAATTCATAGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTTTGAAGGAGCTTCAAGTGACTATAAAAACAGATGTATTTGCATTTGGTGTGGTTCTGGCAGAGTTGATAACAGGGAAACGTGCACTATTTCGTGACAACCAACAAGCCAACAGCATGAGATCACTTGTTACTGTTGTTGACCAAATATTCAAACATGATGACCCAGAGACTGTTTTAGCAGATGCCATAGATGGGAATCTTCAACGCAGCTATCCAATGGAAGATGTATACAAGATGGCAGAACTAGCTCATTGGTGCTTGTGTGAAGATCCAAATGACAGGCCTGAGATGAGGGAGATTGCTGTGGCAATGTCACAGATTGTGATGTCCTCCACAGAATGGGAAGCATCACTAGGTGGAGACAGAGAGGTCTTCAGTGGGGTACTTGATGGAAGATGA 1863 0.4096 MASLTPLLSLLLTLLATSCVSVTVFSLEVSIKTSYLEPFKCSPKISTCNASLYHISYNDNIDDIATYYSVNTSQIKPIIRGINQDYLITVPCSCNNTNGLGGYFYDTTYKVKSNDAFVKISNFVYSGQAWPINRELNLDLDDELTIHLPCGCSEKSDSQIVVTYTVQRNDTPASIAALLNATLDGMVSMNEVLAQNPSFIDVTWVLYVPRELNGLPLSKRKDKKNKLEIITGILAGVTLLSIITLIIVIVVLRRSRANETAKNDLSAVSKRSITNRTISIKNRDFHTEYIEDATTFESERPVIYALEEIEDATNNFDETRRIGVGGYGSVYFGMLEEKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARIQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESLKELQVTIKTDVFAFGVVLAELITGKRALFRDNQQANSMRSLVTVVDQIFKHDDPETVLADAIDGNLQRSYPMEDVYKMAELAHWCLCEDPNDRPEMREIAVAMSQIVMSSTEWEASLGGDREVFSGVLDGR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01248 620 Gene3D LysM domain 154 213 IPR036779 -
Pumo8g01248 620 Gene3D Phosphorylase Kinase; domain 1 294 387 - -
Pumo8g01248 620 Gene3D Transferase(Phosphotransferase) domain 1 388 608 - -
Pumo8g01248 620 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Pumo8g01248 620 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 33 614 IPR044812 GO:0019199|GO:0045087
Pumo8g01248 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Pumo8g01248 620 FunFam Kinase family protein 291 387 - -
Pumo8g01248 620 SMART serkin_6 316 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01248 620 SUPERFAMILY LysM domain 162 209 IPR036779 -
Pumo8g01248 620 ProSiteProfiles Protein kinase domain profile. 316 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01248 620 SUPERFAMILY Protein kinase-like (PK-like) 300 589 IPR011009 -
Pumo8g01248 620 FunFam PTI1-like tyrosine-protein kinase 3 388 606 - -
Pumo8g01248 620 Pfam Protein kinase domain 317 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01248 Pumo-Chr8 44264505 44268530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01248 296 620 Receptor kinase-like Gene Family AT1G51940 51.506 3.60e-115 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pumo8g01248 Pkinase 4.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01248 - - gmx:100800907 1087.79