Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01238 ATGGATGGAATGTACGGAGTGCCGCCGGAGTACGCCGACAAGGCCCTCATGACGCCGGAGAATCTGATTTTCCCGCCGGACTACCACGGCTTCCTCGCCGCCGCCCGGATTCCGATGTTCGGATCCGACGAGCTCTTCTCCGCCGAGCCCTCCGCCGGAATTCAGCGGCAGCAGCAGCAGCAGGAGGAGCAGGAGCATGATGACGTGGCAGCCACCACCCTCATGAAGGCCAAAATCGCCTCTCACCCTCACTACCCTCGCCTCCTCCAAGCTTACATAGACTGTCAGAAGGTTGGGGCGCCTCCTGAAATCGCGCGTTTGTTGGAGGAAATCCGGCGAGAAAATGACCTGTGCAAGAGCGACGTTGTTGGTTCCACGTGCTTTGGAGCCGATCCCGAGCTTGACGAGTTCATGGAAACCTACTGCGACATGCTGGTGAAGTATAAATCCGACTTGGCTCGCCCTTTTGATGAAGCAACCACCTTCCTCAACAAGATCGAAATGCAGCTCAGCCATCTCTGCACTGGCGCTTCCGTTTCCACCGTTTCTGATGATGGGGGTGTGTCTTCGGACGAAGATTTGAGTACCGGAGATGGTGATGCTCAAGATGGTCAATCAAAGGGTGAAGATCGTGAACTAAAGGATAGGCTTTTACGCAAGTTTGGGAGTCACATTGGTACTTTGAAACTCGAGTTTTCAAAGAAGAAAAAGAAGGGTAAGCTTCCAAAGGAAGCAAGACAAACATTGCTTCAATGGTGGAATGTTCACTACAAATGGCCTTACCCTACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAACCAAAGAAAACGTCATTGGAAACCATCCGAGAATATGCAGTTCTCTATGATGGAAAATATTAACGGACGGTTCCTTGCTGATGAATGA 948 0.5063 MDGMYGVPPEYADKALMTPENLIFPPDYHGFLAAARIPMFGSDELFSAEPSAGIQRQQQQQEEQEHDDVAATTLMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKSDVVGSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVSTVSDDGGVSSDEDLSTGDGDAQDGQSKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENINGRFLADE 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01238 315 MobiDBLite consensus disorder prediction 183 212 - -
Pumo8g01238 315 SMART ELK_2 212 233 IPR005539 GO:0003677
Pumo8g01238 315 Pfam KNOX1 domain 75 116 IPR005540 GO:0003677|GO:0005634
Pumo8g01238 315 ProSiteProfiles ELK domain profile. 212 232 IPR005539 GO:0003677
Pumo8g01238 315 Pfam Homeobox KN domain 252 291 IPR008422 GO:0003677|GO:0006355
Pumo8g01238 315 CDD homeodomain 244 296 IPR001356 GO:0003677
Pumo8g01238 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 303 - -
Pumo8g01238 315 Pfam KNOX2 domain 128 174 IPR005541 GO:0003677|GO:0005634
Pumo8g01238 315 ProSiteProfiles 'Homeobox' domain profile. 232 295 IPR001356 GO:0003677
Pumo8g01238 315 SMART KNOX2_2 124 175 IPR005541 GO:0003677|GO:0005634
Pumo8g01238 315 Gene3D - 231 305 - -
Pumo8g01238 315 SUPERFAMILY Homeodomain-like 233 304 IPR009057 -
Pumo8g01238 315 ProSitePatterns 'Homeobox' domain signature. 270 293 IPR017970 GO:0000981|GO:0006355
Pumo8g01238 315 SMART HOX_1 234 299 IPR001356 GO:0003677
Pumo8g01238 315 SMART KNOX1_2 73 117 IPR005540 GO:0003677|GO:0005634
Pumo8g01238 315 Pfam ELK domain 212 233 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01238 Pumo-Chr8 44133277 44142589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01238 1 315 Homeobox Transcription Factor Family AT1G23380 66.565 6.21e-147 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo8g01238 KNOX2 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01238 - - gmx:100794719 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01238 8 44133277 44142589 Pumo8g01238 8 44133277 44142589 ECH