Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01227 ATGAGGCCGATTTTGATGAAAGGCCACGAGAGGCCACTGACGTTCCTCAAGTACAACAGGGACGGTGATCTTCCTCTTCTCCTGCGCCAAGGACCACAACCCCACCGTGTGGTTCGCCGACAACGGCGAACGCCTCGGCACTTACCGCGGCCACAACGGCGCCGAGATTCGAGTCAGCTCATAACGGGTAGTGCGGATCAGACCGCGAAGCTATGGAACGTGCAGTCCGGTCAGCAGTTGTTCACCTTCAATTTCGATTCTCCGGCGAGGTCGGTTGATTTCGCCGTCGGCGATAAGCTCGCCGTTATCACCACTGATCCCTTTATGGAATTGCCGTCTGCAATCCATGTCAAGCGCATTGCTAACGATCCCGCTGAACAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATAGAGCTATTTGGGGACCTCTCAACAGAACCATTATTAGTGCCGGGGAAGATGCTGTCATTCGGATTTGGGATTCTGAGACAGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACTGTAACATCACTGGCTAAGTCTGCTGATGGTTCACATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGGCTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGGCCAGTCAATGCAGTTGCAATGTCACCTCTTCTTGATCATGTGGTACTTGGAGGTGGTCAGGATGCATCAGCCGTTACAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTATGACAAGATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCCAGATTATTTCAACATCAAAATATAG 960 0.4823 MRPILMKGHERPLTFLKYNRDGDLPLLLRQGPQPHRVVRRQRRTPRHLPRPQRRRDSSQLITGSADQTAKLWNVQSGQQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELPSAIHVKRIANDPAEQTGESVLLIKGPQGRINRAIWGPLNRTIISAGEDAVIRIWDSETGKLLKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01227 319 MobiDBLite consensus disorder prediction 35 50 - -
Pumo8g01227 319 MobiDBLite consensus disorder prediction 34 61 - -
Pumo8g01227 319 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 82 IPR001680 GO:0005515
Pumo8g01227 319 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 307 - -
Pumo8g01227 319 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 135 172 - -
Pumo8g01227 319 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 176 IPR001680 GO:0005515
Pumo8g01227 319 Pfam WD domain, G-beta repeat 276 307 IPR001680 GO:0005515
Pumo8g01227 319 Pfam WD domain, G-beta repeat 181 212 IPR001680 GO:0005515
Pumo8g01227 319 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Pumo8g01227 319 PRINTS G protein beta WD-40 repeat signature 60 74 IPR020472 -
Pumo8g01227 319 PRINTS G protein beta WD-40 repeat signature 154 168 IPR020472 -
Pumo8g01227 319 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 307 IPR001680 GO:0005515
Pumo8g01227 319 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 319 IPR027525 GO:0003743|GO:0005737|GO:0005852
Pumo8g01227 319 Gene3D - 53 319 IPR015943 GO:0005515
Pumo8g01227 319 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 215 - -
Pumo8g01227 319 SUPERFAMILY WD40 repeat-like 7 315 IPR036322 GO:0005515
Pumo8g01227 319 SMART WD40_4 128 167 IPR001680 GO:0005515
Pumo8g01227 319 SMART WD40_4 270 309 IPR001680 GO:0005515
Pumo8g01227 319 SMART WD40_4 1 73 IPR001680 GO:0005515
Pumo8g01227 319 SMART WD40_4 170 212 IPR001680 GO:0005515
Pumo8g01227 319 SMART WD40_4 215 254 IPR001680 GO:0005515
Pumo8g01227 319 ProSitePatterns Trp-Asp (WD) repeats signature. 154 168 IPR019775 -
Pumo8g01227 319 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 55 318 - -
Pumo8g01227 319 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 221 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01227 Pumo-Chr8 43861821 43864810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01227 1 319 Eukaryotic Initiation Factors Gene Family AT2G46290 71.951 6.95e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01227 K03246 - gmx:100793485 558.91