Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01222 ATGGCTAAAGATACCTCGTCAAATGAGTCGTCTTCATCGGATTCTGACAAGGCTTCAGCTCCGTCGTCGTCGGATGACTCAGAGTCTCCAAAAAGTACACCATCAAAGTCTCCGCCGCCGTCGCCGCCTTCACCGTCACTGCCTTCACCATCGCCACCATCACCGTCACCGCCGGAACAATCTACTCCTCCGCCGACAGAATCTCCGCCGGCGCCGGCGCAATCTCCACCGCCAACTCCATCCCATTCTCCACCGTCACATTCTCCGCCACCAACTCCGTCACATTCTCCTCCACCAACTCCGTCTCATTCTCCGCCACCTTCCCCTTCTCCGTCAACTCCACCGCCGGACAAATCTCCGCCGTCTCCGTCTCATTCTCCACCGCCTCCCTCAACTCCTCCACCGTCAAAAGATTCAGCTCCTCCACCCTCTCCGTCAGAGCCACCACCGTCGCCGCCACAGTCATCACCGCCACCCCAACAAAATTCTCCTCCCTCACCACAATCTCACGCCCCTCCTCCTCATTCCCTTTCGCCTCCAACTGCAATTCCAACTCCACCTTCACCTGCTTCCCATGTTACTCCGCCGCTGGCGCCGGCCGGTTCATGGCCAAGACACCCTTCACCGCCGCGATCACCACTGGTTTCCCAACCGACACCAAGCGGTGCTGCCCCGAAAAGCGACCTCCCGTCCACGTCACCTAGCTCCGGTAATAATAATACAGGAGAAATTGTTGGTGTTGCTCTCGCCGGGGTTTTCATCATTGCATTTCTTGCTCTAGTTATCTTCTATATATTCAGGAGGAAGCAAAAGAATGCGAATATCTATGCCATGCCACCCCCTAGAAAACCTCATATTAAAGGAGGAGATGTGCATTACTATGTAGAGGAGCCAGGTTTTGGGAGTGGTACACAAGGTGCCATGCATTTAAAATCTCCTTCAGATCCGGCTCAGCACATGAACACTGGTCAGTTAGTTTTTACCTACGAAAAGGTTGCGGAGATCACAAACGGGTTTTCTAGTGAAAACATAATAGGGGAGGGGGGATTTGGGTATGTTTACAAGGCTTCCATGCCTGATGGTAGAGTGGGGGCGCTTAAGATGTTGAAGGCTGGTAGTGGGCAGGGAGAAAGGGAGTTCAGGGCTGAGGTGGACATTATCAGCCGAATCCATCATCGACATTTGGTTTCATTGATTGGCTATTGCATATCTGAACAGCAAAGAGTGCTTATCTATGAGTTCGTTCCTAATGGGAATCTCAATCAGCACTTGCATGGAAATGAATGGCCAATTTTGGATTGGCCCAAGAGGATGAAGATAGCAATTGGCTCTGCAAGGGGCCTGGCATATCTCCATGATGGCTGCAACCCAAAGATTATTCACAGAGATATTAAATCGGCAAACATACTTTTGGATAATGCTTACGAGGCACAGGTTGCAGACTTTGGACTTGCTAGGCTAACCGATGATGCTAATACCCACGTATCGACTAGGGCTCGTCCGCTTCTCCTTCGTGCAGTTGAGACAGGTGACTTTGGTGGACTAGTAGACCCTAGGCTTGAAAGGCAATACGTGGACAGTGAAATGTTCAGAATGATTGAGACAGCTGCAGCATGTGTTCGCCATTCTGCTCCAAAACGACCTCGGATGGTTCAGGTGGCAAGAGCCTTAGATAGTGGCGATCAACTATATGATCTATCTAATGGGGTGAAGTATGGTCAGAGCACTCTTTATGATTCCGGTCAGTATAATGAAGACATTACAAGATTCAGAAGGATGGTTAATGGCAGCTATGATGATTCTGAGTTTGATATGTACAGTACGGATTACCGTTCAACTGTTTCAAGAGAAATGTCTGGATCCAGACATTCAAGGATGCCATATAGTGCAGGTAGTGATTCAGATTTTAGAGTTTTCCACGGCCAAAGGAGCAATGCCCAGAACATGTCTTGA 1953 0.4992 MAKDTSSNESSSSDSDKASAPSSSDDSESPKSTPSKSPPPSPPSPSLPSPSPPSPSPPEQSTPPPTESPPAPAQSPPPTPSHSPPSHSPPPTPSHSPPPTPSHSPPPSPSPSTPPPDKSPPSPSHSPPPPSTPPPSKDSAPPPSPSEPPPSPPQSSPPPQQNSPPSPQSHAPPPHSLSPPTAIPTPPSPASHVTPPLAPAGSWPRHPSPPRSPLVSQPTPSGAAPKSDLPSTSPSSGNNNTGEIVGVALAGVFIIAFLALVIFYIFRRKQKNANIYAMPPPRKPHIKGGDVHYYVEEPGFGSGTQGAMHLKSPSDPAQHMNTGQLVFTYEKVAEITNGFSSENIIGEGGFGYVYKASMPDGRVGALKMLKAGSGQGEREFRAEVDIISRIHHRHLVSLIGYCISEQQRVLIYEFVPNGNLNQHLHGNEWPILDWPKRMKIAIGSARGLAYLHDGCNPKIIHRDIKSANILLDNAYEAQVADFGLARLTDDANTHVSTRARPLLLRAVETGDFGGLVDPRLERQYVDSEMFRMIETAAACVRHSAPKRPRMVQVARALDSGDQLYDLSNGVKYGQSTLYDSGQYNEDITRFRRMVNGSYDDSEFDMYSTDYRSTVSREMSGSRHSRMPYSAGSDSDFRVFHGQRSNAQNMS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01222 650 SUPERFAMILY Protein kinase-like (PK-like) 320 556 IPR011009 -
Pumo8g01222 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Pumo8g01222 650 MobiDBLite consensus disorder prediction 614 637 - -
Pumo8g01222 650 SMART serkin_6 339 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01222 650 FunFam Proline-rich receptor-like protein kinase PERK8 311 414 - -
Pumo8g01222 650 Pfam Protein tyrosine and serine/threonine kinase 342 497 IPR001245 GO:0004672|GO:0006468
Pumo8g01222 650 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 499 605 IPR047117 -
Pumo8g01222 650 ProSiteProfiles Protein kinase domain profile. 339 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01222 650 Gene3D Phosphorylase Kinase; domain 1 303 414 - -
Pumo8g01222 650 MobiDBLite consensus disorder prediction 33 216 - -
Pumo8g01222 650 MobiDBLite consensus disorder prediction 1 237 - -
Pumo8g01222 650 Gene3D Transferase(Phosphotransferase) domain 1 415 511 - -
Pumo8g01222 650 MobiDBLite consensus disorder prediction 614 628 - -
Pumo8g01222 650 MobiDBLite consensus disorder prediction 1 32 - -
Pumo8g01222 650 FunFam Protein kinase superfamily protein 415 487 - -
Pumo8g01222 650 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01222 Pumo-Chr8 43835115 43840285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01222 206 619 Trihelix Transcription Factor Family AT1G70460 46.800 3.00e-139 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pumo8g01222 PK_Tyr_Ser-Thr 3.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01222 - - gmx:100807815 749.969