Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01209 ATGTTAATGGAATCGGATCGGGTCGCTACTCAGTTTCGGGTCATATCCAGATCCGTGGCCACTGCTTTGGACGTTTTTCCTTTCGGTTCTGTGGAGATCTCTGAGGAAACTAAAGAGCATGTTTTGCTGCTGAATGAGCAAGCGAGGAAGGCGAGGTTTGAATTGGAGCAAGAAGATAAACGGGTTGTGATGAGTGTTGTGTCGGGTTTGACCCGGTTTGAGAACCGGGTTGCCCCGGACGAGGGTGAGTTGAAGTGGGTTCTTGAGTATATTGGGGTTAAGAGGTGGAGTGAGTGTAACAAAGAGGTGAAGTTTTTGGAGGGTGAAATTGGGTTTGAGTGCTTGAAGAATGAGGAGAAGAGGAAGATGGGTTTTTTGAGTAGTTTGATGGGGTTCATGAGTTATTGTAGATGCGTGGTGATGGAGGTTGTTGGTTGTGAAGAGAGTAACAAAAGAATTGATGGAAGAAGAGAATGTAGTGCTGAAAGTGAGATGAGTCTGAGTTTGAGTTTTCTTAACTCAGATGATTTTAGATGTCCAATCTCTTTGGAGTTGATGAGTGATCCTGTGACAATAGAGACAGGTCATACTTATGATCGATCTTCGATTTTGAAGTGGTTCAGGAGTGGGAATTTGATGTGTCCCAAGACGGGTAAAAGGCTTAGCACCACTGAGATGGTTCCAAACTTGGCGCTTCGAAGGTTGATTCAGCAATATTGCTATGCAAATGGCATAAGCATTCCCATTGTTGATTTGAGTCGTAGGAATCGTGAGATTACTAGGACAGTGGAGCCTGGGAGTGTGGCAGCTGAGGGAGCAATGAGAATGTTGGCTAGTTTTCTGAATAGAAAGATTGAGAATGGAAGTGGGGAAGAGAAGAATAGAGCTGCATTTGAGATAAGGCTTCTTTCCAAGACAAGCATTTTTAGTAGGTCTTGTTTGGTGGAAGCTGGTTTGGTTCCTCTTTTGTTGAGTTTGTTGTCATCGAGTGATTCGTTGACTCAAGAGAATGCTGCTGCAGCCCTTCTGAACCTCTCAAAATGTGCAAAGAGTAGAAGTGTGATGGTTGAGAAATGGGGGTTGGAGTTGATTGTTGGGGTGTTAAAGAAGGGGCTAAAGATTGAAGCTCGCCAGCATGTTGCTGCTGTGTTGTTTTACCTTAGTGCTGAGTATGGGAACTTAATAGGTGAAGAGCCAGAAGCAATTCCATCATTGATAAGGCTCGTCAAAGATGGCTCTTACCGAAGCAAGAAAAATGGGTTGGTTGCAATTTTTGGCCTCCTTAAGCACCCTGAAAATCATAGGAGGGTGCTTGAAGGTGGAGCAGTTCCTTTGCTAGTTGACATCTTAAAAGGGTGTGAAAAGGAAGACCTTATCACAGACTCGTTGGCAATTCTAGCAACTCTGGCAGAGAGGAGTGAGGGAATGTTAGCAATCCTTCACGGGGAGGCTTTGCATGTAGCTGTTGAAATTTTGAGTTGTTCCACTTCAAGGGTGGGGAAGGAGCACTGTGTGGCTTTATTGCTTTCTTTGTCACTAAATGGTGGAGAAGATGTGGTTGCTTATTTAGTGAAGAGCCCTTCTCTGATGGGATCCTTGTATTCCCAACTCAGTGAAGGCACATCTAGAGCAAGCAAGAAAGCCAGTGCTCTCATCAGGGTCCTCCATGATTTTTACGAAAGGAGGTCCTCTGGCTTCAAGGCTTCAGTTATTCCACAAGAACAGTTCATTCATGTTCGGTAA 1743 0.4452 MLMESDRVATQFRVISRSVATALDVFPFGSVEISEETKEHVLLLNEQARKARFELEQEDKRVVMSVVSGLTRFENRVAPDEGELKWVLEYIGVKRWSECNKEVKFLEGEIGFECLKNEEKRKMGFLSSLMGFMSYCRCVVMEVVGCEESNKRIDGRRECSAESEMSLSLSFLNSDDFRCPISLELMSDPVTIETGHTYDRSSILKWFRSGNLMCPKTGKRLSTTEMVPNLALRRLIQQYCYANGISIPIVDLSRRNREITRTVEPGSVAAEGAMRMLASFLNRKIENGSGEEKNRAAFEIRLLSKTSIFSRSCLVEAGLVPLLLSLLSSSDSLTQENAAAALLNLSKCAKSRSVMVEKWGLELIVGVLKKGLKIEARQHVAAVLFYLSAEYGNLIGEEPEAIPSLIRLVKDGSYRSKKNGLVAIFGLLKHPENHRRVLEGGAVPLLVDILKGCEKEDLITDSLAILATLAERSEGMLAILHGEALHVAVEILSCSTSRVGKEHCVALLLSLSLNGGEDVVAYLVKSPSLMGSLYSQLSEGTSRASKKASALIRVLHDFYERRSSGFKASVIPQEQFIHVR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01209 580 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 318 360 IPR000225 GO:0005515
Pumo8g01209 580 Gene3D - 250 563 IPR011989 -
Pumo8g01209 580 FunFam RING-type E3 ubiquitin transferase 255 566 - -
Pumo8g01209 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 247 IPR013083 -
Pumo8g01209 580 Pfam Armadillo/beta-catenin-like repeat 311 346 IPR000225 GO:0005515
Pumo8g01209 580 ProSiteProfiles U-box domain profile. 172 246 IPR003613 GO:0004842|GO:0016567
Pumo8g01209 580 FunFam RING-type E3 ubiquitin transferase 173 245 - -
Pumo8g01209 580 SMART arm_5 430 471 IPR000225 GO:0005515
Pumo8g01209 580 SMART arm_5 306 347 IPR000225 GO:0005515
Pumo8g01209 580 SMART arm_5 348 389 IPR000225 GO:0005515
Pumo8g01209 580 SUPERFAMILY ARM repeat 271 555 IPR016024 -
Pumo8g01209 580 PANTHER U BOX DOMAIN-CONTAINING 2 555 - -
Pumo8g01209 580 CDD RING-Ubox_PUB 175 226 IPR045210 -
Pumo8g01209 580 Pfam U-box domain 175 243 IPR003613 GO:0004842|GO:0016567
Pumo8g01209 580 SMART Ubox_2 176 239 IPR003613 GO:0004842|GO:0016567
Pumo8g01209 580 SUPERFAMILY RING/U-box 175 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01209 Pumo-Chr8 43619324 43621066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01209 1 578 U-box Gene Family AT1G10560 45.161 1.04e-158 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01209 - - gmx:100795816 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01209 8 43619324 43621066 Pumo8g01209 8 43619324 43621066 ECH