Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01200 ATGTATAGGGTTCACTCTAAAATTCTTCACAGCAATGGTGCTATCACCAACCCCCCTATTTTTTATCCATATTCTTCTTCTTCTTCATACACTTCTTTTTCTTCTTCACCCTCAGTGCCTTATGTTTCTAACTACCAGAAACAATCAGCTCCATCCCCAACTTCTTCATCTGGGAATAGAATAAGCCCTGCAATTCTTTTCATCATAGTCATTTTAGCTGTGGTATTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAGGCATAGGTCTTCTAATTCATCAATTTCCCAATCAAATAGATACCCTGACATGTCTGAATCAGATGCTTACCAGAGACAGTTGCAGCAGCTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCTTTCATAGATGCTCTCCCTGTCTTCTTTTACAAAGAGATAATTGGCTTGAAAGAGCCGTTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAGCTAAGATTGCTTCCCATGTGTAACCATGCTTTTCACATTGAATGCATAGACACATGGTTGTTGTCCAATTCAACTTGCCCTCTCTGTAGAGGGACTCTCTATTCACCAGGCTTTGCCTTTGAGAACTCAGTTTTTGACTTTGAAAGTCAACTTGAGGAAGATGGGGTGTCAGTTAGTGGTGGAGGTGGTGGGGTTGGGGTAGGTTCTGTTAACAAAACTACAGAAAGTCACATAGTGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCACTAATAATCAAGATGTGGTGGAGAGAGGTGAAGGAGAGAGTAGTAGTAGTTAA 834 0.4089 MYRVHSKILHSNGAITNPPIFYPYSSSSSYTSFSSSPSVPYVSNYQKQSAPSPTSSSGNRISPAILFIIVILAVVFFILGLLHLLVRFLIRHRSSNSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENSVFDFESQLEEDGVSVSGGGGGVGVGSVNKTTESHIVNGKRVFSVRLGKFRSTNNQDVVERGEGESSSS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01200 277 SUPERFAMILY RING/U-box 133 202 - -
Pumo8g01200 277 CDD RING-H2_EL5-like 153 196 - -
Pumo8g01200 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 56 262 - -
Pumo8g01200 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 201 IPR013083 -
Pumo8g01200 277 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Pumo8g01200 277 SMART ring_2 154 195 IPR001841 -
Pumo8g01200 277 FunFam RING-H2 finger protein ATL46 116 201 - -
Pumo8g01200 277 Pfam Ring finger domain 153 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01200 Pumo-Chr8 43463360 43464193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01200 80 277 C3H Transcription Factor Family AT2G18650 45.249 5.14e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01200 - - gmx:100805154 423.705