Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01187 ATGCCAACTATTCCAAAGTCATTTACTTCACCCTCTCATTGTATCAAGAGTGTTTTACTTCCAAGGTTCTTGCAAAACAACCTGTATCTGAGTTTGTTAGAACCTGACACTTCAATTCTTAAACAGAGTACATATAAGACACAGCAATTAATCATGCCATTTGGTTTGGTCTCACTCTCAGCCTGGAACAAGCGCCTTAGAAGCAAATCTCAAGATCATACAGATCCCTGGGTTTACAAACCTGCACAGCTTTGGCAACTTGAAGATCAAACGCCTCAACCTACAAAAAGGCTACATGGATCATCTGTTTACACACTCAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGAGAATCTGCTTGGTAAAGGAGGATTTGGCAAAGTCTACCGGGCCACTTTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGTTGCCAGCAATTAAAGCAGCGGAGGGGGAACGTGAGTTTCGTGTCGAAGTTGACATCTTGAGCAGACTTGACCACCCAAATCTTGTTTCGTTGATAGGCTACTGTGCTGATGGAAAGCATAGATTCCTAGTATATGAATATATGCGTAATGGGAACCTGCAAGATCATTTGAATGGAATTGGGGAAAGAAACATGGATTGGCCTCGAAGACTCCAAGTGGCACTGGGAGCTGCAAAAGGGCTTGCTTATCTCCATTCAAGTTCTGATGTTGGAATTCCTATTGTTCATAGGGATTTCAAATCGACCAATATTCTCTTAGACGATAACTTTGAAGCGAAGATATCTGATTTTGGGCTTGCAAAGTTAATGCCAGAAGGACAGGAGACACATGTGACTGCCAGAGTACTTGGTACCTTTGGCTATTTTGATCCCGAGTATACATCGACTGGGAAACTCACTCTACAGAGTGATGTTTATGCTTTTGGTGTCGTTCTTTTGGAGCTTTTGACTGGACGTCGAGCTGTAGATCTAAACCAAGGTCCCAACGATCAAAACCTTGTACTACAGGTGAGGCACATACTGAATGACCGCAAGAAGCTTCGTAAGGTGATAGATCCAGAGATGGCTCGAAATTCTTATACCATTCAGTCTATAGTCATGTTTGCCAATCTGGCATCAAGATGTGTCCGTACCGAGAGTAATGAAAGACCTTCAATGGCAGAATGTGTAAAAGAACTCCTAATGATTATCTATACAAATTCAAAAGGCTTGGGAATGGTTATGCATAGTTTGAGAATGATCTAG 1245 0.4217 MPTIPKSFTSPSHCIKSVLLPRFLQNNLYLSLLEPDTSILKQSTYKTQQLIMPFGLVSLSAWNKRLRSKSQDHTDPWVYKPAQLWQLEDQTPQPTKRLHGSSVYTLKEMEEATCSFSDENLLGKGGFGKVYRATLRSGEVVAIKKMELPAIKAAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMRNGNLQDHLNGIGERNMDWPRRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLDDNFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHILNDRKKLRKVIDPEMARNSYTIQSIVMFANLASRCVRTESNERPSMAECVKELLMIIYTNSKGLGMVMHSLRMI 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01187 414 Gene3D Transferase(Phosphotransferase) domain 1 195 404 - -
Pumo8g01187 414 ProSiteProfiles Protein kinase domain profile. 116 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01187 414 FunFam receptor-like serine/threonine-protein kinase NCRK 195 405 - -
Pumo8g01187 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Pumo8g01187 414 PANTHER OS01G0750732 PROTEIN 5 396 - -
Pumo8g01187 414 CDD STKc_IRAK 122 393 - -
Pumo8g01187 414 SUPERFAMILY Protein kinase-like (PK-like) 102 400 IPR011009 -
Pumo8g01187 414 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Pumo8g01187 414 Pfam Protein kinase domain 117 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01187 414 FunFam serine/threonine-protein kinase PBS1-like 84 194 - -
Pumo8g01187 414 Gene3D Phosphorylase Kinase; domain 1 83 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01187 Pumo-Chr8 43181905 43185787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01187 99 397 Receptor kinase-like Gene Family AT3G58690 47.039 1.38e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Pumo8g01187 Pkinase 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01187 - - gmx:100796654 718.383