Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01180 ATGTCGGTCTCCTGCTCCAAGTGCTTCCCCGATTCCTTCCTTCTCTGCGGCGAGGACTCCTCCGGAATCCTGTCCGGAGACTCGCCGGAGTGTTCCTCCGACCTCGATTCCTCGCCGCCGTCGGAGGCGGAGTCCATCGCCGGATTCATCGAAGACGAACGCAACTTCGTTCCCGGATTCGAGTACCTCAACAGGTTCCAGTCTCGCTCTCTCGACGCCTCCGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTGCAGGCTTATTACGCTTTTCAACCGCTCACGGCTTATCTTTCCGTTAATTACATGGATCGGTTCTTAAATTCTCGGCCGTTGCCGCAAACGAATGGGTGGCCACTGCAACTTCTCTCTGTTGCATGTTTGTCTTTAGCAGCAAAGATGGAGGAACCTCTAGTTCCGTCTCTGTTGGACCTTCAGGTAGAAGGTGCCAAATACGTATTTGAACCCAGAACAATTAGAAGAATGGAACTACTTGTTCTGGGCGTTTTGGATTGGAGGCTAAGATCGGTTACCCCATTTAGCTTCCTTGATTTCTTTGCGTGCAAGTTAGATTCATCTGGAACTTTTACTGGGTTCCTCATTTCACGTGCTACACAAATTATCTTATCTAATATCCAAGAGGCCAGCTTTCTTGCGTATTGGCCATCATGCATTGCTGCAGCAGCCATTCTCCATGCAGCTAACGAAATTCCTAATTGGTCTCTCGTTAGGCCTGAGCATGCAGAGTCATGGTGTGAGGGGTTAAGAAAGGAGAAAATTATAGGGTGCTACCAATTAATGCAAGACCTTGTGATTGACAATAACCGGAGGAAACCCCCAAAAGTGTTACCACAGCTGCGAGTGACATCTCGGCCCCTTATAAGGTCCAGTGTCTCATCATTCTCAGCATCATCCTCTTCTCCTTCATCCTCATTGTCTTTGTGGAAGAAAGAAGTGGGGAGATTGGAATTCAAAGATGCGCTGGTTATTGGTGTAAGAGAAGAGCATGGTGGGACAATGCTTCAGAGCTTGGAAGGAAAAAAAAAACAGAGTCTCAGAGCATATATCAATACGGATCCATTGCCTGGTGTCCACGCGTGA 1104 0.4837 MSVSCSKCFPDSFLLCGEDSSGILSGDSPECSSDLDSSPPSEAESIAGFIEDERNFVPGFEYLNRFQSRSLDASAREESVAWILKVQAYYAFQPLTAYLSVNYMDRFLNSRPLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYVFEPRTIRRMELLVLGVLDWRLRSVTPFSFLDFFACKLDSSGTFTGFLISRATQIILSNIQEASFLAYWPSCIAAAAILHAANEIPNWSLVRPEHAESWCEGLRKEKIIGCYQLMQDLVIDNNRRKPPKVLPQLRVTSRPLIRSSVSSFSASSSSPSSSLSLWKKEVGRLEFKDALVIGVREEHGGTMLQSLEGKKKQSLRAYINTDPLPGVHA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01180 367 Pfam Cyclin, N-terminal domain 48 175 IPR006671 -
Pumo8g01180 367 Gene3D - 50 239 - -
Pumo8g01180 367 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
Pumo8g01180 367 PANTHER CYCLINS 53 275 IPR039361 -
Pumo8g01180 367 SUPERFAMILY Cyclin-like 41 175 IPR036915 -
Pumo8g01180 367 Gene3D - 59 176 - -
Pumo8g01180 367 SUPERFAMILY Cyclin-like 160 279 IPR036915 -
Pumo8g01180 367 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Pumo8g01180 367 FunFam D2/4-type cyclin 59 176 - -
Pumo8g01180 367 Pfam Cyclin, C-terminal domain 178 283 IPR004367 -
Pumo8g01180 367 SMART cyclin_7 81 169 IPR013763 -
Pumo8g01180 367 SMART Cyclin_C_2 178 311 IPR004367 -
Pumo8g01180 367 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01180 Pumo-Chr8 42916240 42919528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01180 1 292 Core Cell Cycle Gene Families AT1G70210 68.243 7.23e-136 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01180 K18810 - gmx:100775224 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01180 8 42916240 42919528 Pumo8g01180 8 42916240 42919528 ECH