Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01175 ATGCCGGGGCACCGCTCCAAGTCGGAGAAGCACGACGGCGGCAGCGGCGGCGAGAAGCAGCTCCGGCGGGACCCCTACGAGGTCCTCGGCGTCTCACGCAACTCCACGGATCAGGAAATCAAAACCGCCTACCGTAAAATGGCGCTCAAATATCATCCGGACAAGAATGCAAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGTTACCTTTTCCTATAATATCCTGTCAGATCCTGATAAACGGCGTCAGTACGACTCGGCTGGCTTTGAGGCTGTTGAATCAGACAACCAAGAGTTGGAGTTAGATCTTTCAAGTTTGGGTGCTGTCAATACAATGTTTGCAGCTCTTTTTAGTAAACTTGGTGTGCCAATTAAGACAACTGTATCTGCAACTGTTTTGGAAGAGGCACTCAATGGTTTAGTTACCACTCGTCCACTTCCATTGGGACATTATATATCTAAAAGGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACGAGCTGGATTTGTTTGTCGAGTACAATCATCAGACAAAAGCAAGTTCAAGTTATTGTATTTCGATCAGGAAGACAATGGTGGTTTAAGTCTTGCACTCCAGGAAGACAGTGCAAAAACAGGTAAGGTCACCTCTGCAGGGATGTATTTTCTTGGGTTTCCTGTTTATCGATTGGATCAAACAATGAACTCTATAGCTGCTGCTAAGGATCCAGATACATCATTTTTCAGAAAACTGGATGGGTTTCAGCCCTGTGAATTAACAGAATTGAAGGCTGGTACCCATGTATTTGCTGTTTATGGTGACAACTTCTTCAAAAGTGCAAACTATACAATAGAGGCCCTGTGTGCTGCACCTTTTAGTGAAGAAAAAGAAAATTTAAGAAACATAGAAGGTCAAATTTTGTCTAAAAGGGCAGAAATATCAAAGTTTGAGGCAGAATATCGAGAGGTTTTGGCACAATTCTCGGAGATGACAAGCAGATACGCACATGAAATGCAAGCAATTGACGAGCTACTGAAGAATAGAAATGAAATACATGCATCATACACTAGTGCTCCTTTAAAACGGACTACTAGTAGGAGCAGAAGTAAAAATTCTTCCAAGGAGGCAAAAGAAGATGGCCAAGCAAAGGAAAAGAGGAGTACAAGAGAACGGCCAAAGAAGAAGAAATGGTATAACCTCCACTTAAGAGTTGATAAGAGAAAGGCTTGCTAA 1239 0.4262 MPGHRSKSEKHDGGSGGEKQLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGLVTTRPLPLGHYISKRVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEDNGGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTMNSIAAAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRNIEGQILSKRAEISKFEAEYREVLAQFSEMTSRYAHEMQAIDELLKNRNEIHASYTSAPLKRTTSRSRSKNSSKEAKEDGQAKEKRSTRERPKKKKWYNLHLRVDKRKAC 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01175 412 FunFam Chaperone protein dnaJ 16 4 106 - -
Pumo8g01175 412 ProSitePatterns Nt-dnaJ domain signature. 66 85 IPR018253 -
Pumo8g01175 412 Gene3D DnaJ domain 12 107 IPR036869 -
Pumo8g01175 412 MobiDBLite consensus disorder prediction 1 34 - -
Pumo8g01175 412 PRINTS DnaJ domain signature 61 81 IPR001623 -
Pumo8g01175 412 PRINTS DnaJ domain signature 26 44 IPR001623 -
Pumo8g01175 412 PRINTS DnaJ domain signature 81 100 IPR001623 -
Pumo8g01175 412 PRINTS DnaJ domain signature 44 59 IPR001623 -
Pumo8g01175 412 SMART dnaj_3 23 81 IPR001623 -
Pumo8g01175 412 MobiDBLite consensus disorder prediction 1 26 - -
Pumo8g01175 412 CDD DnaJ 24 78 IPR001623 -
Pumo8g01175 412 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 411 - -
Pumo8g01175 412 Coils Coil 301 321 - -
Pumo8g01175 412 ProSiteProfiles dnaJ domain profile. 24 89 IPR001623 -
Pumo8g01175 412 MobiDBLite consensus disorder prediction 370 389 - -
Pumo8g01175 412 Pfam DnaJ domain 24 86 IPR001623 -
Pumo8g01175 412 SUPERFAMILY Chaperone J-domain 23 93 IPR036869 -
Pumo8g01175 412 MobiDBLite consensus disorder prediction 390 404 - -
Pumo8g01175 412 MobiDBLite consensus disorder prediction 357 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01175 Pumo-Chr8 42746479 42751245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01175 22 87 C2H2 Transcription Factor Family AT1G74250 42.254 5.02e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01175 - - gmx:100800929 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01175 8 42746479 42751245 Pumo8g01175 8 42746479 42751245 ECH