Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01174 ATGGAAAAGGATATCATTGCTCTTTCTCCAACATGGGATGGTGACAATGGCAATTCCACTGAGAAAAGACTCAGGTTATTTGGCTTTGAGCTAAACCCTTCAAAAGAGGGTTGTGCCAAAGACTCTGGTGAAGGAGATGAAAGTGTGAACTCCTCTAACTCCGTTTCATCAGGAGGAGACAAAACTGTGCAAGAGAAAACCTCAGCCAAAGACCCTGATGAGAAAAAGTTCGAGTGCCAATATTGTTACAAGGAATTTGCAAACTCACAAGCACTAGGAGGCCACCAAAATGCTCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGATTCAATCTATAAACCACTACCTACAACACCCTTTCCCAACCAACCATGGCTTTGCTTACCCCTCTGATACTCCTTGGTTCTATGACCCCTCTACCTATAACTCTGAGTTCACCCTTTGTGAAGAACCTCAGATCAGCTTCAATTCAAATGTTTTAGATACCAACAACTTTTCTTGTGACCAGAAATCTAGTTGGTATTCTCTTGCATCTCACCCTCCTTCCCAACAAGATACTTGCATGTTTACTTTTTCCAATGCAAGTAATAATAGTCCTTTCATCTTCAAGCCTTGCCACTTCCCTGCTTCAAACCAGAGCCATAGTAAAGCCCTAGATCTTCAACTAGGCCTCAACTTGCAGTCAAATAAAAGAAGTTCTCTAAGAAGGATGTAA 720 0.4167 MEKDIIALSPTWDGDNGNSTEKRLRLFGFELNPSKEGCAKDSGEGDESVNSSNSVSSGGDKTVQEKTSAKDPDEKKFECQYCYKEFANSQALGGHQNAHKKERMKKKRLQIQSINHYLQHPFPTNHGFAYPSDTPWFYDPSTYNSEFTLCEEPQISFNSNVLDTNNFSCDQKSSWYSLASHPPSQQDTCMFTFSNASNNSPFIFKPCHFPASNQSHSKALDLQLGLNLQSNKRSSLRRM 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01174 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Pumo8g01174 239 Gene3D Classic Zinc Finger 51 122 - -
Pumo8g01174 239 Pfam C2H2-type zinc finger 77 102 - -
Pumo8g01174 239 SUPERFAMILY beta-beta-alpha zinc fingers 73 104 IPR036236 -
Pumo8g01174 239 FunFam zinc finger protein 5 51 127 - -
Pumo8g01174 239 MobiDBLite consensus disorder prediction 45 63 - -
Pumo8g01174 239 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Pumo8g01174 239 MobiDBLite consensus disorder prediction 33 71 - -
Pumo8g01174 239 PANTHER ZINC FINGER PROTEIN 5 18 229 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01174 Pumo-Chr8 42714837 42715979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01174 11 113 C2H2 Transcription Factor Family AT5G06650 38.679 1.19e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo8g01174 zf-C2H2_6 6.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01174 - - gmx:100527006 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01174 8 42714837 42715979 Pumo8g01174 8 42714837 42715979 ECH