Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01151 ATGGACGCGGACGGCGTCGTTTCCTTTGGTCATGTCTCGCCGGAGGATTCCCACGAGGTTCATGTCTTGGCCGTTGATGACAGTCTCGTCGATCGAAAGGTCATTGAACGCTTGCTCAAAATCTCAGCTTGTAAAGTAACGGCTGTGGATAGTGGAATCAGAGCACTGCAATTTCTGGGGCTGGATGAGCAGAGAAGGACCTCTGAATCTGATGGTTTTGTCCCTGGTTTGAAGGTGGATCTAATTATCACAGACTACTGCATGCCCGAAATGACCGGTTACGAGTTGCTCAAGAAAATCAAGGAATCGTCCACGTTCAGAGAAATTCCAGTAGTGATTATGTCTTCCGAAAACATTTTGCCGCGCATAGACAGATGCTTGGAGGAAGGTGCAGAGGATTTCATAGTGAAGCCAGTGAAGTTAGCTGATGTAAAACGGTTAAAGGATTACATGACACCTAAAGAGGTTAAGGGGAGAAGCCAAGAAGAGAGAAGAAGTGGTGGCGATGGTGGTGAGGGTGGTGGTGTGGAGATAAACAACAAAAGGAAGCCGGAAGAGCAAGACATCTCTGACGTGTCATCATCACCACCGTCCACTTCTACACTTTCATCATCATCACCGTCCGTTTCTTCGCCATCACCATCACCATCACCGTCATCTTCTCCTACTTCTTCACCCAGCGTGCTTGGTTCTCCAATCAGACGGCTTAAAATGACCAACACCGATTGA 729 0.4787 MDADGVVSFGHVSPEDSHEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLDEQRRTSESDGFVPGLKVDLIITDYCMPEMTGYELLKKIKESSTFREIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLADVKRLKDYMTPKEVKGRSQEERRSGGDGGEGGGVEINNKRKPEEQDISDVSSSPPSTSTLSSSSPSVSSPSPSPSPSSSPTSSPSVLGSPIRRLKMTNTD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01151 242 ProSiteProfiles Response regulatory domain profile. 21 152 IPR001789 GO:0000160
Pumo8g01151 242 Pfam Response regulator receiver domain 22 144 IPR001789 GO:0000160
Pumo8g01151 242 MobiDBLite consensus disorder prediction 152 189 - -
Pumo8g01151 242 SUPERFAMILY CheY-like 20 146 IPR011006 -
Pumo8g01151 242 MobiDBLite consensus disorder prediction 190 210 - -
Pumo8g01151 242 SMART REC_2 20 151 IPR001789 GO:0000160
Pumo8g01151 242 MobiDBLite consensus disorder prediction 152 242 - -
Pumo8g01151 242 Gene3D - 20 190 - -
Pumo8g01151 242 MobiDBLite consensus disorder prediction 222 242 - -
Pumo8g01151 242 CDD REC_typeA_ARR 22 147 - -
Pumo8g01151 242 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 200 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01151 Pumo-Chr8 41709688 41711333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01151 14 234 Response Regulator Gene Family AT1G59940 57.333 9.47e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo8g01151 Response_reg 1.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01151 K14492 - gmx:100779833 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01151 8 41709688 41711333 Pumo8g01151 8 41709688 41711333 ECH