Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01142 ATGAAGAGGTCTAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAACGGCCTGTGATGTCTTCACGAGGAGAAGCGTCCGGGCAACCGCAGATGACAAATGGAGGTGCTCAGAAACTGACAACTAATGATGCCCTAGCTTATCTCAAGGCTGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGATGACTTTTTGGAAGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACTGCAGGTGTCATTGCAAGAGTGAAGGATCTGTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAAGGTTATGAAATCACACTTCCATCGGAGGATGAACAACCTGCCCCAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGTTTTCAAGGTGATGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTACTGAGGTCTACCAGGAGGTTGCCGCTATTTTCCAGGACCACCCTGATCTTCTTGTTGAGTTTACTCATTTTCTTCCAGACGCGTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGAAATTCTATGCTTCGTGATAGGAGCTCTGCAATGCCAACCATACGGCAAATGCATGTTGAAAAGCGAGAAAGGACCATGGTTTCACATGGTGATCGTGACCCCAGTGTTGATCGTCCCGACCCAGATCACGACAGAGGTTTGTTAAGGATAGAAAAGGAGAGGAGACGTGTAGAGAAGGAAAAGGAACGTAGAGAAGATAGAGACAAGAGAGAACGTGAAAGGGATGATAGAGATTATGAGCATGATGGGGGTCGAGATAGGGAGCGATTCTCTCTCAAACGGAATCGTAAGGCTGAAGACTCTGGAGCTGAACCATTGATTGATGCAGATGAAAATTTTGGTACGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTTGCTTTCTGCGAAAAGGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTTCAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATGAAGGTTGAAGACAGGGATAGAGATCGGGATCGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGATAAATCTACTGTGATTGCCAACAAGGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGAGAAGTATTTATCCAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGCACTCCTAGTTACCGCCTCTTGCCAAAAAACTACCCAATACCTGTAGCTAGCCAGAAAACAGAACTTGGTGCCGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAGTAATATAATTAAAGGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAAGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATTCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAAGATACGAAAAGCTTGAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATCAGTGAAAAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGGCCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCCAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGCGGAGAAATTTGCACAACCGAACACGTGGATAAAGTTGTGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCAGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTATGTCAAAAATGGCACTGCAAGTGTTGCTGAAAGTGAAGGTAGCCCTGTTGTGGGTGGTACCATAATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGAGTGTATGCCATTAGATCAATCAGCTTCTAGTAAAGCATGGCAGTCAAATGGTGATAGTGGGGTTAGAGAGGATAGGTATCTTGATGACCGTGCATTGCGTAAAACTGAAACTTTGGGCAGCAATACACAGCATGGTAAAATGAATAGTATTGCATTCACACCTGATGAACTATCAGGATTTAACAATAAGCAAGACCAGTCCAGCGAACAGTTAGTGAATGCTAATGTCTCACCAGCATCTGGAATGGAGCAAAGCAATGGAAGGACAAACATAGATAATTTGTCAGGACTCACTGCAACTCCAACTAGACCTGGTAATGCTTCTGTTGAGGGAGGACTTGATGTACTGTCATCAGAGGGTGGTGATTCTACAAGACCAGGTACATCCACAAATGGGGCCATCACTGGAGGCACCAAAGTTCACCGATACCAAGAGGAACCGGTTCAACCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGAAGACTTTGAAGAAGATAACTTTGCAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGGAAAGGATGGTGGTGTGAGTCGGCAATACCAAAATAGACACGGGGAAGAAGTTTGTGGTGAAACTAGAGGAGAAAATGATGCTGATGCTGATGATGAAGGTGAAGAAAGCCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCATGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCCGAAGGAATAGCTGATGCCCATGATGTTGAAGGAGATGGAATGTCATTGCCATATTCTGAACGCTTTCTACTAACCTGTGAAGCCTCTAGCAAAGCATGTTCCTCCAATGTTACATGA 3408 0.417 MKRSRDEVFTSCSQLKRPVMSSRGEASGQPQMTNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKDLFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLVEFTHFLPDASAAASTHYASARNSMLRDRSSAMPTIRQMHVEKRERTMVSHGDRDPSVDRPDPDHDRGLLRIEKERRRVEKEKERREDRDKRERERDDRDYEHDGGRDRERFSLKRNRKAEDSGAEPLIDADENFGTRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKVEDRDRDRDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMSLYPSKEKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINSNIIKGDSPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFKYSDPDIHEDLYQLIKYSCGEICTTEHVDKVVKVWTTFLEPMLCVPSRPQGAEDTEDVVKAKNNYVKNGTASVAESEGSPVVGGTIMNPKHINVSRNGDECMPLDQSASSKAWQSNGDSGVREDRYLDDRALRKTETLGSNTQHGKMNSIAFTPDELSGFNNKQDQSSEQLVNANVSPASGMEQSNGRTNIDNLSGLTATPTRPGNASVEGGLDVLSSEGGDSTRPGTSTNGAITGGTKVHRYQEEPVQPFKSEREEGELSPNEDFEEDNFAVYGGNGLDAVHKGKDGGVSRQYQNRHGEEVCGETRGENDADADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTCEASSKACSSNVT 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01142 1135 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Pumo8g01142 1135 FunFam Paired amphipathic helix protein SIN3 331 405 - -
Pumo8g01142 1135 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Pumo8g01142 1135 FunFam Paired amphipathic helix protein Sin3 44 106 - -
Pumo8g01142 1135 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Pumo8g01142 1135 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Pumo8g01142 1135 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 973 987 - -
Pumo8g01142 1135 PANTHER SIN3B-RELATED 38 820 IPR039774 GO:0003714
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 1045 1059 - -
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 1072 1105 - -
Pumo8g01142 1135 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 226 310 - -
Pumo8g01142 1135 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Pumo8g01142 1135 Pfam Sin3 family co-repressor 501 591 IPR013194 -
Pumo8g01142 1135 Gene3D Paired amphipathic helix 332 404 IPR036600 GO:0006355
Pumo8g01142 1135 FunFam Paired amphipathic helix SIN3-like protein 123 194 - -
Pumo8g01142 1135 SMART hdac_interact2seq4b 498 598 IPR013194 -
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 864 933 - -
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 226 324 - -
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 849 863 - -
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 949 965 - -
Pumo8g01142 1135 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 1013 1037 - -
Pumo8g01142 1135 Coils Coil 253 276 - -
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 822 1111 - -
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 828 845 - -
Pumo8g01142 1135 MobiDBLite consensus disorder prediction 432 460 - -
Pumo8g01142 1135 SUPERFAMILY PAH2 domain 332 400 IPR036600 GO:0006355
Pumo8g01142 1135 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Pumo8g01142 1135 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01142 Pumo-Chr8 41607683 41619015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01142 20 143 WRKY Transcription Factor Family AT4G12020 47.619 6.88e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo8g01142 Sin3_corepress 3.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01142 K11644 - gmx:100811928 2011.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01142 8 41607683 41619015 Pumo8g01142 8 41607683 41619015 ECH