Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo8g01142 | ATGAAGAGGTCTAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAACGGCCTGTGATGTCTTCACGAGGAGAAGCGTCCGGGCAACCGCAGATGACAAATGGAGGTGCTCAGAAACTGACAACTAATGATGCCCTAGCTTATCTCAAGGCTGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGATGACTTTTTGGAAGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACTGCAGGTGTCATTGCAAGAGTGAAGGATCTGTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAAGGTTATGAAATCACACTTCCATCGGAGGATGAACAACCTGCCCCAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGTTTTCAAGGTGATGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTACTGAGGTCTACCAGGAGGTTGCCGCTATTTTCCAGGACCACCCTGATCTTCTTGTTGAGTTTACTCATTTTCTTCCAGACGCGTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGAAATTCTATGCTTCGTGATAGGAGCTCTGCAATGCCAACCATACGGCAAATGCATGTTGAAAAGCGAGAAAGGACCATGGTTTCACATGGTGATCGTGACCCCAGTGTTGATCGTCCCGACCCAGATCACGACAGAGGTTTGTTAAGGATAGAAAAGGAGAGGAGACGTGTAGAGAAGGAAAAGGAACGTAGAGAAGATAGAGACAAGAGAGAACGTGAAAGGGATGATAGAGATTATGAGCATGATGGGGGTCGAGATAGGGAGCGATTCTCTCTCAAACGGAATCGTAAGGCTGAAGACTCTGGAGCTGAACCATTGATTGATGCAGATGAAAATTTTGGTACGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTTGCTTTCTGCGAAAAGGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTTCAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATGAAGGTTGAAGACAGGGATAGAGATCGGGATCGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGATAAATCTACTGTGATTGCCAACAAGGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGAGAAGTATTTATCCAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGCACTCCTAGTTACCGCCTCTTGCCAAAAAACTACCCAATACCTGTAGCTAGCCAGAAAACAGAACTTGGTGCCGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAGTAATATAATTAAAGGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAAGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATTCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAAGATACGAAAAGCTTGAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATCAGTGAAAAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGGCCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCCAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGCGGAGAAATTTGCACAACCGAACACGTGGATAAAGTTGTGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCAGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTATGTCAAAAATGGCACTGCAAGTGTTGCTGAAAGTGAAGGTAGCCCTGTTGTGGGTGGTACCATAATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGAGTGTATGCCATTAGATCAATCAGCTTCTAGTAAAGCATGGCAGTCAAATGGTGATAGTGGGGTTAGAGAGGATAGGTATCTTGATGACCGTGCATTGCGTAAAACTGAAACTTTGGGCAGCAATACACAGCATGGTAAAATGAATAGTATTGCATTCACACCTGATGAACTATCAGGATTTAACAATAAGCAAGACCAGTCCAGCGAACAGTTAGTGAATGCTAATGTCTCACCAGCATCTGGAATGGAGCAAAGCAATGGAAGGACAAACATAGATAATTTGTCAGGACTCACTGCAACTCCAACTAGACCTGGTAATGCTTCTGTTGAGGGAGGACTTGATGTACTGTCATCAGAGGGTGGTGATTCTACAAGACCAGGTACATCCACAAATGGGGCCATCACTGGAGGCACCAAAGTTCACCGATACCAAGAGGAACCGGTTCAACCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGAAGACTTTGAAGAAGATAACTTTGCAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGGAAAGGATGGTGGTGTGAGTCGGCAATACCAAAATAGACACGGGGAAGAAGTTTGTGGTGAAACTAGAGGAGAAAATGATGCTGATGCTGATGATGAAGGTGAAGAAAGCCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCATGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCCGAAGGAATAGCTGATGCCCATGATGTTGAAGGAGATGGAATGTCATTGCCATATTCTGAACGCTTTCTACTAACCTGTGAAGCCTCTAGCAAAGCATGTTCCTCCAATGTTACATGA | 3408 | 0.417 | MKRSRDEVFTSCSQLKRPVMSSRGEASGQPQMTNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKDLFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLVEFTHFLPDASAAASTHYASARNSMLRDRSSAMPTIRQMHVEKRERTMVSHGDRDPSVDRPDPDHDRGLLRIEKERRRVEKEKERREDRDKRERERDDRDYEHDGGRDRERFSLKRNRKAEDSGAEPLIDADENFGTRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKVEDRDRDRDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMSLYPSKEKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINSNIIKGDSPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFKYSDPDIHEDLYQLIKYSCGEICTTEHVDKVVKVWTTFLEPMLCVPSRPQGAEDTEDVVKAKNNYVKNGTASVAESEGSPVVGGTIMNPKHINVSRNGDECMPLDQSASSKAWQSNGDSGVREDRYLDDRALRKTETLGSNTQHGKMNSIAFTPDELSGFNNKQDQSSEQLVNANVSPASGMEQSNGRTNIDNLSGLTATPTRPGNASVEGGLDVLSSEGGDSTRPGTSTNGAITGGTKVHRYQEEPVQPFKSEREEGELSPNEDFEEDNFAVYGGNGLDAVHKGKDGGVSRQYQNRHGEEVCGETRGENDADADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTCEASSKACSSNVT | 1135 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo8g01142 | 1135 | Gene3D | Paired amphipathic helix | 123 | 195 | IPR036600 | GO:0006355 | |
Pumo8g01142 | 1135 | FunFam | Paired amphipathic helix protein SIN3 | 331 | 405 | - | - | |
Pumo8g01142 | 1135 | Gene3D | Paired amphipathic helix | 44 | 106 | IPR036600 | GO:0006355 | |
Pumo8g01142 | 1135 | FunFam | Paired amphipathic helix protein Sin3 | 44 | 106 | - | - | |
Pumo8g01142 | 1135 | Pfam | Paired amphipathic helix repeat | 356 | 400 | IPR003822 | GO:0006355 | |
Pumo8g01142 | 1135 | Pfam | Paired amphipathic helix repeat | 147 | 191 | IPR003822 | GO:0006355 | |
Pumo8g01142 | 1135 | Pfam | Paired amphipathic helix repeat | 61 | 105 | IPR003822 | GO:0006355 | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 973 | 987 | - | - | |
Pumo8g01142 | 1135 | PANTHER | SIN3B-RELATED | 38 | 820 | IPR039774 | GO:0003714 | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 1045 | 1059 | - | - | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 1072 | 1105 | - | - | |
Pumo8g01142 | 1135 | ProSiteProfiles | PAH domain profile. | 38 | 108 | IPR003822 | GO:0006355 | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 226 | 310 | - | - | |
Pumo8g01142 | 1135 | SUPERFAMILY | PAH2 domain | 122 | 193 | IPR036600 | GO:0006355 | |
Pumo8g01142 | 1135 | Pfam | Sin3 family co-repressor | 501 | 591 | IPR013194 | - | |
Pumo8g01142 | 1135 | Gene3D | Paired amphipathic helix | 332 | 404 | IPR036600 | GO:0006355 | |
Pumo8g01142 | 1135 | FunFam | Paired amphipathic helix SIN3-like protein | 123 | 194 | - | - | |
Pumo8g01142 | 1135 | SMART | hdac_interact2seq4b | 498 | 598 | IPR013194 | - | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 864 | 933 | - | - | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 226 | 324 | - | - | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 849 | 863 | - | - | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 949 | 965 | - | - | |
Pumo8g01142 | 1135 | ProSiteProfiles | PAH domain profile. | 334 | 403 | IPR003822 | GO:0006355 | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 1013 | 1037 | - | - | |
Pumo8g01142 | 1135 | Coils | Coil | 253 | 276 | - | - | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 822 | 1111 | - | - | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 828 | 845 | - | - | |
Pumo8g01142 | 1135 | MobiDBLite | consensus disorder prediction | 432 | 460 | - | - | |
Pumo8g01142 | 1135 | SUPERFAMILY | PAH2 domain | 332 | 400 | IPR036600 | GO:0006355 | |
Pumo8g01142 | 1135 | ProSiteProfiles | PAH domain profile. | 124 | 194 | IPR003822 | GO:0006355 | |
Pumo8g01142 | 1135 | SUPERFAMILY | PAH2 domain | 38 | 107 | IPR036600 | GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo8g01142 | Pumo-Chr8 | 41607683 | 41619015 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo8g01142 | 20 | 143 | WRKY Transcription Factor Family | AT4G12020 | 47.619 | 6.88e-25 | 110 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Pumo8g01142 | Sin3_corepress | 3.8e-35 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo8g01142 | K11644 | - | gmx:100811928 | 2011.88 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo8g01142 | 8 | 41607683 | 41619015 | Pumo8g01142 | 8 | 41607683 | 41619015 | ECH |