Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01136 ATGTCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACTCACGGACATGCACCGACGGTGGCGCCGCCGTCTCCGGCGGCGGCTCTCCGAGGGAGAACGGCATCATGCTGTTCGGCGTAAGAGTCACCGAAGCTAGCTCGTCGTTCAGGAAGAGCGCTAGCATGAACAACCTCTCACAGTACGACGCGGACTCCAACGCCGCGGACGCCGGCTACGCCTCCGACGACGTCGTTCACGCCTCCGGCCGCACGCGAGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAAGAGCACAGGTTGTTCCTGCTAGGGTTACACAAAGTTGGAAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTGAAAACTCGCACACCTACTCAGGTCGCTAGTCATGCTCAGAAGTACTTCCTCCGCCGCCACAATCAGAACCGTCGCCGCCGGAGATCTAGCCTCTTCGACATCACCACTGATACGGTGATGGAATCTTCTACTATAATGGAAGAAGAACAAGTTCCGCAAGAAACAGTGGCAGCGCCTATCCCCGCCGCATATCCGCCGTCACATTTCGGTGGTTTCCCCGGCGCGGGTTTTCCGATGAGTCTATCTCCGGTGGTGTTGCCGGTGAGTGGTGAGAGACTAACCAAGCCGATCAGGCCGACGCCGATCTTGCCGGTGCCTCCGTCTTCGAAGATGGCTAATTTGAACTTGAAAGAGAAAGCTTCTCCTACTAATATCATTGAGCCTTTGCCGTTGTCGTTGAATCTTCCGCCGCCGCCACCGCCACCGCCACCGCCGTCATCTCAGGACCGGTCGCCGGCAAGTAGTGGTCACTCGTCGCCGTCGTCAGTCGTCATCGGCGGCGGCTTTTCAGGCTATGTCTGCAGCGAAGTTCAGCAGGCGGCGGGGATAGTATCATCAGCGTTGCTTGAAAAGAAGGGAAAAAAAAAATAG 957 0.5705 MSRTCSQCGNNGHNSRTCTDGGAAVSGGGSPRENGIMLFGVRVTEASSSFRKSASMNNLSQYDADSNAADAGYASDDVVHASGRTRERKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQVPQETVAAPIPAAYPPSHFGGFPGAGFPMSLSPVVLPVSGERLTKPIRPTPILPVPPSSKMANLNLKEKASPTNIIEPLPLSLNLPPPPPPPPPPSSQDRSPASSGHSSPSSVVIGGGFSGYVCSEVQQAAGIVSSALLEKKGKKK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01136 318 SMART sant 90 140 IPR001005 -
Pumo8g01136 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Pumo8g01136 318 CDD SANT 93 138 IPR001005 -
Pumo8g01136 318 MobiDBLite consensus disorder prediction 253 271 - -
Pumo8g01136 318 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
Pumo8g01136 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Pumo8g01136 318 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Pumo8g01136 318 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Pumo8g01136 318 MobiDBLite consensus disorder prediction 1 21 - -
Pumo8g01136 318 MobiDBLite consensus disorder prediction 1 31 - -
Pumo8g01136 318 PANTHER TRANSCRIPTION FACTOR KUA1 1 252 - -
Pumo8g01136 318 FunFam transcription factor MYB1R1 92 143 - -
Pumo8g01136 318 Gene3D - 92 143 - -
Pumo8g01136 318 MobiDBLite consensus disorder prediction 249 284 - -
Pumo8g01136 318 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Pumo8g01136 318 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01136 Pumo-Chr8 41525685 41528085 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo8g01136 Myb_DNA-binding 3.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01136 - - gmx:778178 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01136 8 41525685 41528085 Pumo8g01136 8 41525685 41528085 ECH
Pumo8g01136 8 41525685 41528085 Pumo8g01136 8 41525685 41528085 PCT