LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo8g01127	ATGAGCGAGCGCGTTCCATCGTCGCGAACGATTCGACTCGGCCGAGTCGAGCCTCAAGCTCCCGGCCACCGCACCATCTTCTGCAACGATCGCCAAGCCAATCTTCCCGTTCGCTTCAAGGGGAATTCAATATCGACTACAAAGTACAACTTTTTCACTTTTCTGCCGAAAGGATTGTTTGAACAGTTCAGGCGGGTTGCTAATCTCTACTTTCTTTCAATCTCAATTTTGTCAACCACACCAATAAGCCCTGTGTCTCCAATAACAAATGTGCTTCCTCTGTCTTTGGTACTTCTCCTCTCTCTTATTAAGGAGGCTTTTGAGGACTGGAAGCGTTTTCAAAATGACATGGCTGTAAACAATAATACAGTAGATGTTTTGCAAGATCAAAAGTGGGTGTCTATACCCTGGAAAAAGTTACAAGTTGGTGATGTTGTCAAGGTTAAGCAGGATGGATTCTTTCCTGCAGATCTGCTTTTCCTGGCTAGCACAAATGTAGATGGTGTCTGCTACATTGAGACTGCTAATTTGGATGGTGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAGACTTGGGATTACCTGACTCCAGAGAAGGCATCTGAGTTTAAAGGTGAAATTCAGTGTGAACAACCTAACAATTCATTGTATACCTTCACTGGAAATCTTATAATTCAAAACCAAATACTTCCTGTCAGTCCAAACCAACTTCTGTTGCGAGGATGCAGTCTCAGGAATACAGATTATATTGTTGGGGTTGTTATTTTTACAGGACATGAAACAAAGGTGATGATGAATGCTATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGGAAGCTTGATAAGCTCATACTTGCTCTCTTTGTGACTCTCTTTGTGATGTGTTTCATTGGAGCTGTAGGCAGTGCTATCTTTGTAAACAAGAAGTATTTCTATTTACATCTTGAATCATCAGAAGAGGGCTCAGGACAGTTCAATCCAAGAAACAGATTTTTGGTTTTCCTTCTCACTATGTTTACCCTCATCACTTTGTACTCAACAATCATCCCCATTTCACTTTATGTATCAATAGAGATGATCAAATTTATTCAGTCCACTCAATTTATCAACAAGGACTTGCACATGTACCATTATGAAACTAACACCCCAGCATTGGCCAGAACTTCAAATCTGAACGAAGAACTTGGGCAGGTGGAATACATCTTCTCTGACAAAACTGGCACTCTGACAAGAAACTTAATGGAGTTCTTTAAGTGTTCAATTGGAGGAGAGGTCTATGGAAATGGCATGACTGAAATTGAGAAAGGAATAGCAGAGCGTAGTGGCTTAAAACTAGAGGAAAATATATCGATCAATGCATTGCGAGAGAGAGGTTTTAATTTTGATGATGCTAGGCTTATGAGAGGAGCTTGGAGGAATGAGCCAAATCCTGATAGCTGCAAGGAATTCTTCAGATGCCTTGCTATATGCCACACTGTGCTTCCTGAGGGCGATGAGACCCCTGAGAAGATCAAATATCAAGCTGCATCACCTGATGAGGCTGCTTTGGTTATTGCTGCGAAGAACTTTGGTTTTTTCCTTTTCAGACGCACTCCTACAATGATATATATTCGTGAATCTCATGTTGAGAAGATGGGTAAAATTCAAGATGTATCGTATGAGATTTTGAATGTGCTTGAGTTTAACAGTACAAGGAAGCGTCAGTCTGTTGTATGTCGTTATCCAGATGGGAGGCTTGTATTGTACTGCAAGGGTGCTGATACTGTAATATGTGAGAGATTAGCTGATGGTTATAATGATATAAAAAAAGTTACTAGAGAACATTTGGAGCAATTTGGGTCTGCTGGACTACGCACATTATGCCTGGCCTACAAAGAATTACATCCTGATGTTTATGAAAGCTGGAACGAGAAGTTCATCCAAGCCAAATCTTCTCTACGTGATCGTGAAAAGAAGTTAGATGAGGTTGCAGAACTTGTAGAAAATGATCTCATTTTGATTGGTAGCACTGCCATAGAAGACAAGCTTCAAGAGGGAGTACCAGCCTCATGCAATTTAATAAACAATGAGATGAAGCAATTTATTATCAGTTCAGAAACTGATGTGATTAGAGAAGTTGAAGACAGGGGGGACCAAGTAGAAATTGCACAATTTATCAAAGAAGAAGTGGAAGAAAGAACTGAAGAAGTGCCTTGA	2202	0.4033	MSERVPSSRTIRLGRVEPQAPGHRTIFCNDRQANLPVRFKGNSISTTKYNFFTFLPKGLFEQFRRVANLYFLSISILSTTPISPVSPITNVLPLSLVLLLSLIKEAFEDWKRFQNDMAVNNNTVDVLQDQKWVSIPWKKLQVGDVVKVKQDGFFPADLLFLASTNVDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEIQCEQPNNSLYTFTGNLIIQNQILPVSPNQLLLRGCSLRNTDYIVGVVIFTGHETKVMMNAMNVPSKRSTLERKLDKLILALFVTLFVMCFIGAVGSAIFVNKKYFYLHLESSEEGSGQFNPRNRFLVFLLTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLHMYHYETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGNGMTEIEKGIAERSGLKLEENISINALRERGFNFDDARLMRGAWRNEPNPDSCKEFFRCLAICHTVLPEGDETPEKIKYQAASPDEAALVIAAKNFGFFLFRRTPTMIYIRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADTVICERLADGYNDIKKVTREHLEQFGSAGLRTLCLAYKELHPDVYESWNEKFIQAKSSLRDREKKLDEVAELVENDLILIGSTAIEDKLQEGVPASCNLINNEMKQFIISSETDVIREVEDRGDQVEIAQFIKEEVEERTEEVP	733

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo8g01127	733	SUPERFAMILY	Calcium ATPase, transduction domain A	121	265	IPR008250	-
	Pumo8g01127	733	Pfam	Phospholipid-translocating ATPase N-terminal	26	90	IPR032631	-
	Pumo8g01127	733	SUPERFAMILY	Calcium ATPase, transmembrane domain M	37	398	IPR023298	-
	Pumo8g01127	733	ProSitePatterns	E1-E2 ATPases phosphorylation site.	406	412	IPR018303	-
	Pumo8g01127	733	Gene3D	-	411	676	IPR023299	GO:0000166
	Pumo8g01127	733	Pfam	E1-E2 ATPase	120	360	-	-
	Pumo8g01127	733	FunFam	Phospholipid-transporting ATPase	512	667	-	-
	Pumo8g01127	733	Gene3D	-	104	269	-	-
	Pumo8g01127	733	Pfam	Cation transport ATPase (P-type)	504	595	-	-
	Pumo8g01127	733	PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	25	684	-	-
	Pumo8g01127	733	NCBIfam	phospholipid-translocating P-type ATPase	39	684	IPR006539	GO:0000287\|GO:0005524\|GO:0015914\|GO:0016020\|GO:0140326
	Pumo8g01127	733	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	411	673	IPR023299	GO:0000166
	Pumo8g01127	733	FunFam	Phospholipid-transporting ATPase IC	401	413	-	-
	Pumo8g01127	733	SUPERFAMILY	HAD-like	392	700	IPR036412	-
	Pumo8g01127	733	FunFam	Phospholipid-transporting ATPase	100	269	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo8g01127	Pumo-Chr8	41442111	41454960	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo8g01127	3	726	Primary Pumps ATPases	AT1G59820	76.228	0.0	1213

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo8g01127	K14802		-	gmx:100815547	1304.27