Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01125 ATGGATCCGGCGGCGATGATGAACGGCGGCCCCAACACGACGTCGTATCACCTGTCAGAGATCTGGCAGTTCCCGCCTCCCAACGCGCCAGACGCGTTGGGCCTCCGAAGGCCCCAGTTCGGCCACGGGTTCGGTGACTTCGCCCCGGGTCACGACCCGCCCAGCATTGGCCACCACAAGAAGCGACGCGACGCCGCCGAGGAGGAATCCGCTAAGGGCCTCTCCACCACCAATGCCGTGAATGAGGGTGGTGGTGGTGATGGGAAACGGGTTAAGACCACGACGAACAAGAGTGAGAGTGGGAAAGGTGAAGGAGAAACCAGTTCAGGAAAGCCTGCGGAGCAAGGTGGAAAGCCACCTTCGGAGCCTCCGAAGCAAGACTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAGAGAGCTAGACGGGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTAGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGAATGGCCCCCGGAATCGAAGTGTTTCCACCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATGCCATTCGTGTCTCAAGCTACAAGAGAGTATAGCCGAGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAAGAACAACGTAG 777 0.5238 MDPAAMMNGGPNTTSYHLSEIWQFPPPNAPDALGLRRPQFGHGFGDFAPGHDPPSIGHHKKRRDAAEEESAKGLSTTNAVNEGGGGDGKRVKTTTNKSESGKGEGETSSGKPAEQGGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMAPGIEVFPPKDFDQQTFDTTGMPFVSQATREYSRGSSPEWLHMQVGSGFERTT 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01125 258 CDD bHLH_AtBPE_like 127 212 - -
Pumo8g01125 258 FunFam Basic helix-loop-helix transcription factor 134 206 - -
Pumo8g01125 258 Gene3D - 134 207 IPR036638 GO:0046983
Pumo8g01125 258 Coils Coil 184 204 - -
Pumo8g01125 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 187 IPR011598 GO:0046983
Pumo8g01125 258 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 63 228 IPR024097 GO:0006355
Pumo8g01125 258 MobiDBLite consensus disorder prediction 20 126 - -
Pumo8g01125 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 205 IPR036638 GO:0046983
Pumo8g01125 258 SMART finulus 143 193 IPR011598 GO:0046983
Pumo8g01125 258 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
Pumo8g01125 258 MobiDBLite consensus disorder prediction 53 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01125 Pumo-Chr8 41423747 41427510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01125 1 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 53.333 1.35e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g01125 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01125 - - gmx:100794893 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01125 8 41423747 41427510 Pumo8g01125 8 41423747 41427510 ECH
Pumo8g01125 8 41423747 41427510 Pumo8g01125 8 41423747 41427510 PCT