Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01114 ATGTCTCCCTCCATCTCCATCATCATTCTCCTCTCGCTCCACCTCTTCTCTACACCTTCCAACACTCAACAAACATCATCATGTGCTTCCAATTTAAACACAAAAAACACACACCCCTGCCCTCCCTTCCCTTCTAATAATCCCCCCTACCCATTCTCCTCCACCCCAGGCTGTGGCCACCCCTCCTTCCACCTAACCTGCTCCACCCCTCACTCCCAAATCTCCATCAACAACTTCTCCTTCTCCATCCTCTCCTACAACCCCAACACTTCCTCCATATTCCTCTCTCCAAACCACCCTAACCCACCCACACACCCCAAGTGCCCCAACTTCCCTTCCATCCCCACACACCCCATCAACCTCTCCTCCACCCCCTTACACGTCTCCGCCGCCACCTGCTCCCGCCTCTCCTTCCTCCGCCCCTGCTCCCCCCCTCCCTCCCTCCCCAACTGCTCCCACTGCCCCTTCCAATGCCACCTCATCAAAAACCCCTCCCACCTCCTCCACGACTGCAGATCCACCCACCACCACTCCCCCTCCGACACCGACCAGTCCTCCTCCTGCCAGACCGACATCCTCGGCTTCCTCGAACAGCTCCTCCAAACCGGCATCCAGCTCGACTGGGACCCATCCCGTGACCCCTACTTCACCAACTGCACCACCTGCAACGGCATCTGCGGCTTCAATTCCTCCTCCCCAAACTCCCCCTTCCTCTGCCTCCGCTTCCGCCCCCAATCCACACTCTCCCCTCCATGGATTCGCAAACTCAAACCCAACAAAATGGCCATCTTCACAGTCATCATCGCCTTAACCTCCTTGCTCCTCCTAATCTCAGTCACCACCGCCATTCTCCGCTCGAGCAGATCAAAATCCTCATCCGCAACGCAACAAGACCCCAACACGCTCTTCCTCCACAACCACCGCTCCGCAAGCCTCCTCCCTCCCGTTTGCACCTACGAAGACCTAGCCCTCTCCACCAACAACTTCGACTCCAAGCGCAAAATCGGCGACGGCGGCTTCGGCTCCGTCTACCTCGCGCACCTCCGCGACGGGCGCCTCGCCGCCGTGAAGTACCTCCACCGCCACCACGCCACCGCCGCGTTCTCCACCAAGTCCTTCTGCAACGAGATTCTCATCCTCTCTTCCATCAACCACCCGAACCTCGTGAAGCTCCACGGTTACTGCAGCGACCCGAGGGGGCTTCTCTTAGTCTACGATTACATCCCTAACGGAACCCTAGCGGAGCACCTCCACAACCGTAAGGGCTCGCTGACGTGGCAGGTGCGGCTCGACATCGCGTTGCAAACGGCGTTAGCGATGGAGTATCTTCATTTCTCGGTGGTCCCGCCGGTTGTGCATAGGGACATAACGTCGTCGAATATTTTCGTGGAGAGGGATATGAGGATAAAGGTTGGGGATTTTGGGCTTTCGAGGCTTTTGGTGGTGCAGGATACGACGTCGTCTTCGAACGGGTTTGTGTGGACCGGGCCGCAGGGTACACCTGGTTATTTGGACCCGGATTATCACCGGTCGTTCCGGTTAACCGAGAAGAGTGACGTGTACAGTTTCGGGGTTGTGTTGTTGGAGCTTATTTCTGGGTTGAGAGCGGTTGATCAGAGTAGGGATAAGCGCGAAATGGCGCTTGCGGATTTGGTCGTTTCGCGGATCCAGATGGGGCAGTTGCATCAAGTGGTTGACCCCTGTCTCAGCGGCGGCGGCGACGCCGTCGCCTCCGTGGCGGAGCTTGCTTTCCGGTGTGTGGCGGCGGATAAGGACGACCGGCCCGACGCGAGGGAGGTGGTGGAGGAGCTGAAGCGGGTGCGGAACCGAACCGTGACGGCGGTGAAGGAGTGA 1854 0.5852 MSPSISIIILLSLHLFSTPSNTQQTSSCASNLNTKNTHPCPPFPSNNPPYPFSSTPGCGHPSFHLTCSTPHSQISINNFSFSILSYNPNTSSIFLSPNHPNPPTHPKCPNFPSIPTHPINLSSTPLHVSAATCSRLSFLRPCSPPPSLPNCSHCPFQCHLIKNPSHLLHDCRSTHHHSPSDTDQSSSCQTDILGFLEQLLQTGIQLDWDPSRDPYFTNCTTCNGICGFNSSSPNSPFLCLRFRPQSTLSPPWIRKLKPNKMAIFTVIIALTSLLLLISVTTAILRSSRSKSSSATQQDPNTLFLHNHRSASLLPPVCTYEDLALSTNNFDSKRKIGDGGFGSVYLAHLRDGRLAAVKYLHRHHATAAFSTKSFCNEILILSSINHPNLVKLHGYCSDPRGLLLVYDYIPNGTLAEHLHNRKGSLTWQVRLDIALQTALAMEYLHFSVVPPVVHRDITSSNIFVERDMRIKVGDFGLSRLLVVQDTTSSSNGFVWTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLRAVDQSRDKREMALADLVVSRIQMGQLHQVVDPCLSGGGDAVASVAELAFRCVAADKDDRPDAREVVEELKRVRNRTVTAVKE 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01114 617 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 610 IPR044652 GO:0004672
Pumo8g01114 617 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Pumo8g01114 617 CDD STKc_IRAK 335 606 - -
Pumo8g01114 617 ProSitePatterns Tyrosine protein kinases specific active-site signature. 451 463 IPR008266 GO:0004672|GO:0006468
Pumo8g01114 617 FunFam Putative serine/threonine-protein kinase At1g18390 family 305 407 - -
Pumo8g01114 617 SUPERFAMILY Protein kinase-like (PK-like) 316 609 IPR011009 -
Pumo8g01114 617 Gene3D Transferase(Phosphotransferase) domain 1 408 616 - -
Pumo8g01114 617 Gene3D Phosphorylase Kinase; domain 1 305 407 - -
Pumo8g01114 617 FunFam LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 408 617 - -
Pumo8g01114 617 Pfam Protein tyrosine and serine/threonine kinase 332 604 IPR001245 GO:0004672|GO:0006468
Pumo8g01114 617 ProSiteProfiles Protein kinase domain profile. 329 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01114 Pumo-Chr8 41247225 41249078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01114 40 614 Receptor kinase-like Gene Family AT1G69910 59.967 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pumo8g01114 PK_Tyr_Ser-Thr 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01114 - - gmx:100816739 989.564