Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01108 ATGGGTGCTGGTGACTACTACAAGATACTGAAAGTGAAGCATGATGCCACGGATGAAGAGGTGAAGAAGGCTTATAAGAGGTTGGCCATGAAATGGCACCCAGATAAGAACCTTGTTGAAGACCCTCTTAGGAAGGAAGAGTTTGAGGCCAAGTTCAAGCAGGTTTCTGAGGCCTATGATGTGCTCAGTGACCCCAAGAAGCGCCAGATCTATGACTTGTATGGTCACTATCCCCTTAACTCTAACCGGTTCAGCAAAGAAAATGGTGATGGTAATATGAAGGATGCAGGGGTGGTTGAAAGCAGCTTGCTTTGTACCCTTGAAGAGCTTTACCACGGTTGCAAAAAGAAGTTGAAGGTCTCAAGGACTGTTCCTGATGAATTCGGAGAGTTAAAGTCTGTGGAAGAAATCTTGAAGATAGACATAAAACCTGGTTGGAAGAAGGGCACAAAAATCACTTTTCCTGGGAAAGGAAACCAAGAACCAGGATGTGCTCCAGCTGATCTAATTTTTGTGTTGGATGAAAGACCTCATGCTATTTTCAAGAGGGATGGAAATGATCTTGTAGTGATCCAGAAGATATTACTTGTAGATGCTCTCACAGGAAAGACTCTCAAGTTGACTACCTTAGATGGAAGAGATCTCACAATCCAAGTGACAGATATTGTGAAACCTGGCTATGAGCTGGTGGTCCCAAATGAGGGCATGCCCATCTCAAAGGAACCTGGCAAGAAAGGAAATCTCAGAATCAAGTTTGATGTTATGTTTCCATCAAGGCTGACCACACAACAGAAGTGTGATCTAAGAAGGATTCTGAGTGATGCTGATTTCTAA 834 0.4341 MGAGDYYKILKVKHDATDEEVKKAYKRLAMKWHPDKNLVEDPLRKEEFEAKFKQVSEAYDVLSDPKKRQIYDLYGHYPLNSNRFSKENGDGNMKDAGVVESSLLCTLEELYHGCKKKLKVSRTVPDEFGELKSVEEILKIDIKPGWKKGTKITFPGKGNQEPGCAPADLIFVLDERPHAIFKRDGNDLVVIQKILLVDALTGKTLKLTTLDGRDLTIQVTDIVKPGYELVVPNEGMPISKEPGKKGNLRIKFDVMFPSRLTTQQKCDLRRILSDADF 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01108 277 Pfam DnaJ domain 5 72 IPR001623 -
Pumo8g01108 277 SMART dnaj_3 4 67 IPR001623 -
Pumo8g01108 277 Pfam DnaJ C terminal domain 100 257 IPR002939 -
Pumo8g01108 277 CDD DnaJ_C 99 260 - -
Pumo8g01108 277 SUPERFAMILY HSP40/DnaJ peptide-binding domain 102 178 IPR008971 GO:0006457|GO:0051082
Pumo8g01108 277 Gene3D - 178 258 - -
Pumo8g01108 277 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Pumo8g01108 277 CDD DnaJ 5 64 IPR001623 -
Pumo8g01108 277 FunFam DNAJ heat shock family protein 177 272 - -
Pumo8g01108 277 FunFam Dnaj homolog subfamily b member 94 176 - -
Pumo8g01108 277 SUPERFAMILY HSP40/DnaJ peptide-binding domain 181 265 IPR008971 GO:0006457|GO:0051082
Pumo8g01108 277 FunFam DnaJ-like subfamily B member 13 2 96 - -
Pumo8g01108 277 PRINTS DnaJ domain signature 7 25 IPR001623 -
Pumo8g01108 277 PRINTS DnaJ domain signature 47 67 IPR001623 -
Pumo8g01108 277 PRINTS DnaJ domain signature 67 86 IPR001623 -
Pumo8g01108 277 PRINTS DnaJ domain signature 25 40 IPR001623 -
Pumo8g01108 277 Gene3D DnaJ domain 2 97 IPR036869 -
Pumo8g01108 277 Gene3D - 98 176 - -
Pumo8g01108 277 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 272 - -
Pumo8g01108 277 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Pumo8g01108 277 SUPERFAMILY Chaperone J-domain 4 85 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01108 Pumo-Chr8 41167151 41170768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01108 6 74 C2H2 Transcription Factor Family AT1G74250 37.681 9.88e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01108 K09510 - gmx:100778440 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01108 8 41167151 41170768 Pumo8g01108 8 41167151 41170768 ECH
Pumo8g01108 8 41167151 41170768 Pumo8g01108 8 41167151 41170768 PCT