Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01093 ATGCGTCGCAAGAGAGACAGGGCGCCCTACTTTTCCCGCCACGACGCCGCCAAGCGCCGCCGCCCCTTGCCGGAGCCCGCGGAGGAGGACAGACCGACGACGAGGCCGGCGCCACCGTCCGCGGTGGTCGTGATGGGGCTCCCCCAAGACTGCTCCGTCCTCGATCTCAAGACCCGATTTGAGATCTACGGCGCCATCTCCCGCATCCGCATCGACCGCGGCACCGTCGGCTACATCACCTACCGGACCAAGGACTCCGCCGACGCCGCCATCGCCGCCGGCCTCGACCCCTCCTTCGGAATCACCATTAACTCCAAAAAGGTTCAGGTGTTGTGGGCAACGGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAGCAAGGATAAAGGTTCAATGTCAAAGCTTGTGCGTGCTGAGGTACCCTTGAGCAAGCATGGAAGAAGTAATAGACTCGCCTCAGCTATAGGGAATACCAAACGCAGTGAGGAAAGCCCAGGTAGCTCAGTTTTAGAAGTGCCTTTCAAGGGCAGAGAAATTGTTGCTTATGATGATATCCTCTAA 564 0.5851 MRRKRDRAPYFSRHDAAKRRRPLPEPAEEDRPTTRPAPPSAVVVMGLPQDCSVLDLKTRFEIYGAISRIRIDRGTVGYITYRTKDSADAAIAAGLDPSFGITINSKKVQVLWATDPLAMWREGVGNSKDKGSMSKLVRAEVPLSKHGRSNRLASAIGNTKRSEESPGSSVLEVPFKGREIVAYDDIL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01093 187 Gene3D - 2 117 IPR012677 -
Pumo8g01093 187 MobiDBLite consensus disorder prediction 8 32 - -
Pumo8g01093 187 CDD RRM_SF 42 110 - -
Pumo8g01093 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 92 IPR000504 GO:0003723
Pumo8g01093 187 PANTHER GEO13361P1-RELATED 31 152 - -
Pumo8g01093 187 SUPERFAMILY RNA-binding domain, RBD 27 121 IPR035979 GO:0003676
Pumo8g01093 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 115 IPR000504 GO:0003723
Pumo8g01093 187 SMART rrm1_1 41 111 IPR000504 GO:0003723
Pumo8g01093 187 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01093 Pumo-Chr8 41045370 41046965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01093 1 187 Homeobox Transcription Factor Family AT1G27050 53.140 1.04e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01093 - - gmx:106797175 337.421