Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01092 ATGGCGGGTGCCAAGCTTTATGCTGGTTCAAACATGTCACTTCTCCTCCAAAACGAAAGGCTCCCTTGCTCCTCTGAAGTCCTTGAGTCTCTTTGGGCTCACACCTCTAACCCTGCTTCCTTCCAAGGTTCAAAATCTGTGGTTGATTTTGAGAATGTTAGTGGGAGCAGGGTGACGGATAGGCCTTTCTTTCAAGCGTTGGAGAAGGAAGAGACCTGTGATGAGGATTATGAGGGGTGCTTCCATCAACCGGGGAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTTGAGGTAGAGAACAAGCTTGAACCTGAAAGGAAGGTTCAACTTGCAAAAGAGCTTGGCTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAGACCAAGCAACTAGAAAAAGACTATGGCGCATTGAAAGCTAGTTATGACAGACTCAAAGGTGACTATGAAAGTCTTCTTCAAGAGAATGACAAGTTAAAAGCAGAGGTGAATTCTCTGGAGAGCAAATTGATTCTTAGAGATAAAGAGAAGGAGGAGAATTCGGATGACAAATCATCTCCTGATGCTGTCAATTCACCCCACCACAAGGAGCCTATGGATTTAATTTCAAATGCAACAACAACAACAACAACATCTGAAAATGGGACCAAAGTGTCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCCAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCACCCCTCCTCATTCGTGGAGCCTGCTGATTCCTCCCATGCCTTTGAACCAGACCACTCTGACTTCTCCCAAGATGAAGAGGATAACTTTAGTGAAAACCTTTTGACCCTCCCTTCTTCCTTACCTAAGGTTGAACTTGAAGAACCCTGCTATGATCACCCTCCTGAAAACTCTTGTAATTTTGGCTTCCAGGTTGAGGATCAAACCTTCTGTTTCTGGCCCTACTGA 1014 0.4527 MAGAKLYAGSNMSLLLQNERLPCSSEVLESLWAHTSNPASFQGSKSVVDFENVSGSRVTDRPFFQALEKEETCDEDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGALKASYDRLKGDYESLLQENDKLKAEVNSLESKLILRDKEKEENSDDKSSPDAVNSPHHKEPMDLISNATTTTTTSENGTKVSLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFVEPADSSHAFEPDHSDFSQDEEDNFSENLLTLPSSLPKVELEEPCYDHPPENSCNFGFQVEDQTFCFWPY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01092 337 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Pumo8g01092 337 MobiDBLite consensus disorder prediction 245 290 - -
Pumo8g01092 337 MobiDBLite consensus disorder prediction 183 207 - -
Pumo8g01092 337 CDD homeodomain 84 142 IPR001356 GO:0003677
Pumo8g01092 337 MobiDBLite consensus disorder prediction 183 212 - -
Pumo8g01092 337 MobiDBLite consensus disorder prediction 274 288 - -
Pumo8g01092 337 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Pumo8g01092 337 SMART HOX_1 83 145 IPR001356 GO:0003677
Pumo8g01092 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 68 226 IPR045224 GO:0003700
Pumo8g01092 337 Coils Coil 154 181 - -
Pumo8g01092 337 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Pumo8g01092 337 Gene3D - 80 147 - -
Pumo8g01092 337 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Pumo8g01092 337 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Pumo8g01092 337 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Pumo8g01092 337 FunFam Homeobox-leucine zipper protein HAT5 79 143 - -
Pumo8g01092 337 SUPERFAMILY Homeodomain-like 77 143 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01092 Pumo-Chr8 41016935 41018598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01092 43 281 Homeobox Transcription Factor Family AT3G01470 42.324 2.89e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo8g01092 Homeodomain 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01092 - K09338 gmx:547565 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01092 8 41016935 41018598 Pumo8g01092 8 41016935 41018598 ECH
Pumo8g01092 8 41016935 41018598 Pumo8g01092 8 41016935 41018598 PCT