Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01089 ATGGAGCTGGGTGCCACAACTATCCAGCGATCCTTCGACGACCGCTACACGCGCCACGCTCGCGACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCTCCATCCCGGGCCACCCCATCGTCTTCGCCAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGGCCCGCGAGGTCCTCGGCCAGAGTGCCGCCATCTTCCAGGGCCCGCGCACTTCCCGAAGGCCCGTCATGGAAATTCGCGAGGCTGTTAGAGAGGAGCGCACCGCGCAGGTCGTTCTGCTCAATTACCGCAAGGACGGCACGCCGTTTTGGATGCTCTTCCGCGTTTCCCCCGTTTTCAGCGGCGATGGCGGTGCCGTCGTGCACTTTGTCGCCGTTCAGGTGCCGCTTCAGAAAAAGGACGGCTCCGGTGTCAGGGATTTCGGGTTCGGGTGCTGTCGGAAGGAAGTGAGCGCTGATTCGTTGGCAGAACTTGGTCGCGTTTGTTCCTTGGAGCAAGTGCTCGAACGTGATGTCAGAGAATTGGAGAGAGAAGAGCCATGTGAGGCGAGTGATGATGAGAAGCGAAGTGCTGCTACTGCCATGGACAACATCTTTTCTGTGCTGACCCATTACAGTGAGGCGACGGGCAGATTGGTGTGTAGGAAGAGGTGCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTATCTAATCCGTATTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAAAAATGAAGTTTTGGGCCGCAACTGTAGATTTTTAGGTGGAACAGATACTGATACCTCGACATTACATCTGATAAGGGAAAGCATTAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAATTCAAATAGAAGACAACAATAAAAACGATGATAGCCAGTGTTTGAGTCCTAAGAAGAGACAGCTTAGTGTGGTGGGTGTAGTAAAGGTTGCAGTGAGGAGTTTATCAATGACTGCGGGATCTTCGAAATCGTAG 1155 0.51 MELGATTIQRSFDDRYTRHARDSLDELPDSFTITDPSIPGHPIVFASPGFLKLTGYAAREVLGQSAAIFQGPRTSRRPVMEIREAVREERTAQVVLLNYRKDGTPFWMLFRVSPVFSGDGGAVVHFVAVQVPLQKKDGSGVRDFGFGCCRKEVSADSLAELGRVCSLEQVLERDVRELEREEPCEASDDEKRSAATAMDNIFSVLTHYSEATGRLVCRKRCSIPDVGLLSTSLIISLGRIKQSFVLSNPYLSDMPIVYASDAFLKLTGYAKNEVLGRNCRFLGGTDTDTSTLHLIRESIKTEQPCTVRILNYRKDKSSFWNFLHISPVRDASGKVAYFVGIQIEDNNKNDDSQCLSPKKRQLSVVGVVKVAVRSLSMTAGSSKS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01089 384 ProSiteProfiles PAC domain profile. 303 357 IPR000700 -
Pumo8g01089 384 ProSiteProfiles PAS repeat profile. 16 89 IPR000014 -
Pumo8g01089 384 FunFam protein TWIN LOV 1 243 379 - -
Pumo8g01089 384 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 129 IPR035965 -
Pumo8g01089 384 Gene3D PAS domain 243 382 - -
Pumo8g01089 384 SMART pas_2 18 87 IPR000014 -
Pumo8g01089 384 SMART pas_2 231 304 IPR000014 -
Pumo8g01089 384 PANTHER PROTEIN TWIN LOV 1 1 374 - -
Pumo8g01089 384 FunFam Protein TWIN LOV 1 isoform D 30 207 - -
Pumo8g01089 384 Gene3D PAS domain 13 137 - -
Pumo8g01089 384 Pfam PAS domain 29 130 IPR000014 -
Pumo8g01089 384 Pfam PAS domain 252 342 IPR000014 -
Pumo8g01089 384 NCBIfam PAS domain S-box protein 256 341 IPR000014 -
Pumo8g01089 384 NCBIfam PAS domain S-box protein 42 124 IPR000014 -
Pumo8g01089 384 CDD PAS 27 121 IPR000014 -
Pumo8g01089 384 CDD PAS 253 341 IPR000014 -
Pumo8g01089 384 ProSiteProfiles PAS repeat profile. 256 278 IPR000014 -
Pumo8g01089 384 SUPERFAMILY PYP-like sensor domain (PAS domain) 253 342 IPR035965 -
Pumo8g01089 384 SMART pac_2 306 348 IPR001610 -
Pumo8g01089 384 SMART pac_2 93 136 IPR001610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01089 Pumo-Chr8 40863628 40868763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01089 15 363 AGC Kinase Gene Family AT5G58140 31.899 1.48e-59 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01089 - - gmx:100785562 692.96