Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01082 ATGGCAAAAATCTACAATTTCTTCCTTTTAACATGTTTGGTAGTCATCATACCTACCTTGCATGCCAATGTCAAGGAGGATGAACCGTATTGGGAGAGGCAAACTCAAGTACTTGATTCATATTGGAAGGAAAGAGCAGAAGTTGCTGAAAAAGAGAACCAAGAAGCTTATACTTCTGACCCATATTCACTCACCAGCAACTTGACCTATAGTGTTAGCCAAATCATAGTTGGTGAAAAGGATGGAAGAAGGAATTTGAAGGGAAGAGGTGGTAAATGCATGGCCACAAACCCAATTGACAGGTGTTGGAGGTGTGACCCCAATTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGCAGAAACACTATTGGTGGAAAGAATGGTCCATTCTATGTGGTAACCAGCAATTTAGATAATAACATGGTGAATCCTGTTCCTGGTACCCTTAGGCATGCAGTCACAAGAACTGGACCCTTGTGGATCATCTTTGCTCATAGCATGAGCATTAGGCTCAACCAGGAGCTCATTATGACAGGTGACAAGACCATTGATGGAAGAGGAGTTGATGTGTACATTGTTAATGGGGCTGGTATTACCATCCAGTTCATCAAGAATGTGATCATCCATGGAATCAAAATTTTTGACATTCAGGTTGGTACTGGTGGACTTATTAGAGATTCTGAGACCCACTATGGTATAAGGACTCAGAGTGATGGTGATGGAATTTCCATCTTTGGCTCCAGCAATATTTGGATTGACCATGTTTCCATGAGAAACTGCAGAGATGGATTGATAGATGCCATTCAGGGTTCCACTGCTATTACCATCTCCAATAGCCATTTCACAGACCACAATGAGGTGATGTTGTTTGGGGCTAGTGACAGTTATGATGGTGATAAGATTATGCAGATCACACTGGCATTCAACCACTTTGGCAAGAGATTAATCCAAAGGATGCCAAGGTGCAGATATGGTTTTGTCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCACCCTACCATTATTAGTGAGGGCAACAGATTCATAGCCCCTAACAACAATTTTGCTAAAGAGATAACAAAGAGAGAGTACTCACCAGAGTCAGAGTGGAAAAACTGGCAATGGAGATCAATCAATGATGAGTACATGAATGGAGCATTCTTCGTAGAAGGTGGGTCCCAGCTAACAAACAGGCCATTCTCAAGGCAGGACATGATAACAGCCAAGCCTGGATCATATGTGGGAAGGCTCACTCGCTATGCTGGAAGCCTTAAGTGCATTGTGGGAAAGCCTTGTTAA 1341 0.428 MAKIYNFFLLTCLVVIIPTLHANVKEDEPYWERQTQVLDSYWKERAEVAEKENQEAYTSDPYSLTSNLTYSVSQIIVGEKDGRRNLKGRGGKCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRNTIGGKNGPFYVVTSNLDNNMVNPVPGTLRHAVTRTGPLWIIFAHSMSIRLNQELIMTGDKTIDGRGVDVYIVNGAGITIQFIKNVIIHGIKIFDIQVGTGGLIRDSETHYGIRTQSDGDGISIFGSSNIWIDHVSMRNCRDGLIDAIQGSTAITISNSHFTDHNEVMLFGASDSYDGDKIMQITLAFNHFGKRLIQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNNFAKEITKREYSPESEWKNWQWRSINDEYMNGAFFVEGGSQLTNRPFSRQDMITAKPGSYVGRLTRYAGSLKCIVGKPC 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01082 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
Pumo8g01082 446 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Pumo8g01082 446 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Pumo8g01082 446 PRINTS Pollen allergen Amb family signature 387 411 IPR018082 -
Pumo8g01082 446 PRINTS Pollen allergen Amb family signature 243 264 IPR018082 -
Pumo8g01082 446 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Pumo8g01082 446 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Pumo8g01082 446 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Pumo8g01082 446 PANTHER PECTATE LYASE 18-RELATED 49 444 IPR045032 GO:0030570
Pumo8g01082 446 Pfam Pectate lyase 184 362 IPR002022 -
Pumo8g01082 446 SUPERFAMILY Pectin lyase-like 97 436 IPR011050 -
Pumo8g01082 446 Gene3D - 96 439 IPR012334 -
Pumo8g01082 446 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Pumo8g01082 446 SMART amb_all 171 368 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01082 Pumo-Chr8 40737569 40740184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01082 8 446 Polysaccharide Lyase AT1G14420 58.772 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01082 K01728 - gmx:100796307 849.351