Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01079 ATGTCGCAGGTTCAGTCCATTACCTTGAAGCATCTCTCACTACCAACCAACACTTTCGTTCCTCCAAAGTTCAACATTCCTTTGAACCACAACTTTTCTTTCACACCCAAATTCACATTCTCATCATCACTCTCTGTCAAATGCTACTACCACCCTAACCTCGTCCAACCCAGGCCCTTCCCACCACTGCCACAACGCCCTCCAGTTGCAGAATTGCCACAGCAAAGGGTGTACGTGGGTTACTCCGTTTACACGAGGAAGGGTGTGCTCACCGTGACTCCTAGACCTCCGGAATTTGAATCAAAAAGTTCTGGGGCGTTCAAAGTGTCCAAGGAAGGTTATGTTGTGCTCCAGTTTGCTCCCTCAGTTGGTGCTGATGAGCCCATTTATGATTGGAACCAAAAGCAGATATTCTCACTATCGGTGAGTGAAATGGGAACTCTAATTAGCCTTGGTGCAAGGGATTCTTGGGAATTTTCTCATGAAACTGTTAAGACAAAAAGAAATGAAATTGAAGTTAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGTCACTTATTTAGCTTAAGCGTTCAAAAAAAGCCCGCGAACATGGAGGGAATTCAGAAAAGCATCTTTCTCCCTGTTACAAGGGCAGAGCTAGCAGTTTTAAGGTCGCTTTTCAATTATATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAGTACCTACTCCAGATATGGAGCAAACAATGAATGGAACAGATAG 795 0.4403 MSQVQSITLKHLSLPTNTFVPPKFNIPLNHNFSFTPKFTFSSSLSVKCYYHPNLVQPRPFPPLPQRPPVAELPQQRVYVGYSVYTRKGVLTVTPRPPEFESKSSGAFKVSKEGYVVLQFAPSVGADEPIYDWNQKQIFSLSVSEMGTLISLGARDSWEFSHETVKTKRNEIEVRKVLKVEPLLDATGHLFSLSVQKKPANMEGIQKSIFLPVTRAELAVLRSLFNYIMPYLLGWNAFGNSIKPEVYSQVNSTYSRYGANNEWNR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01079 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 70 264 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pumo8g01079 264 Pfam Whirly transcription factor 83 223 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pumo8g01079 264 SUPERFAMILY ssDNA-binding transcriptional regulator domain 75 264 IPR009044 GO:0003677|GO:0006355
Pumo8g01079 264 Gene3D Transcriptional Coactivator Pc4; Chain A 69 253 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01079 Pumo-Chr8 40713840 40718009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01079 30 264 Whirly Transcription Factor Family AT1G14410 51.064 4.30e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Pumo8g01079 Whirly 5.5e-46 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01079 K26559 - gmx:100797370 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01079 8 40713840 40718009 Pumo8g01079 8 40713840 40718009 ECH